Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0643
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               32   0.28 
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         29   3.4  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   4.5  
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)                     28   6.0  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   6.0  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     28   6.0  
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   28   6.0  
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)                      27   7.9  
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)                  27   7.9  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 214 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 104
           +G HQGH+ N    +GH G V +++H   TRS G  Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = -1

Query: 235 NGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 68
           +G    DHGG    H G   +    R  +GG   DH G  R  G   R     GR   DH
Sbjct: 6   HGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR---DH 62

Query: 67  GRNSR 53
           G   R
Sbjct: 63  GGTGR 67



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
 Frame = -1

Query: 235 NGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRISNDH 68
           +G    DHGG +   G     H   G + GG   DH G  R  G   R     GR   DH
Sbjct: 13  HGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR---DH 69

Query: 67  GRNSR 53
           G   R
Sbjct: 70  GGTGR 74


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 214 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 59
           HG   GH    H     N G SH++ G++    N+  +  + G   ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 235  NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 125
            +GR++   GG     H+++    RG  GGVS  H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 220 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 53
           H HGG +   T+ H   + H+    H HR +     + +      GR ++DH    R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473


>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 339

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 177 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 43
           G+G +++G   + G  L   A + G+G + AG+ ++   + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -1

Query: 220 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 65
           H HGG  G+  +     GH GG  H H G     G+     + DG     HG
Sbjct: 129 HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 220 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 128
           HD+GGH       H+  GH+ G+ HD+ G+T
Sbjct: 83  HDYGGHD------HYDGGHHDGMHHDY-GHT 106


>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 235 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 131
           +G  SHD  G   H  +   + GH+G  SHD  G+
Sbjct: 5   DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = -1

Query: 235 NGRVSHDHGGHQGHVTNVH---WARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDH 68
           NG  +    GH+    N H    A GH    ++ H   T +   N  A  ++   +N H
Sbjct: 20  NGHENMTANGHENMTANSHENMTANGHENMTANGHENMTANGHENMTANGHENMTANSH 78


>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
          Length = 215

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 177 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 67
           G+G +++G   + G  L   A + G+G + AG+ +++
Sbjct: 78  GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVS 114


>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
          Length = 209

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 177 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 67
           G+G +++G   + G  L   A + G+G + AG+ +++
Sbjct: 94  GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVS 130


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 223 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 122
           S  H  H+G VTN  ++         DHRG  RS
Sbjct: 831 SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,285,698
Number of Sequences: 59808
Number of extensions: 164263
Number of successful extensions: 529
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)