Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0643
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    27   0.17 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.23 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.23 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.8  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   3.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.4  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 124 SLGNNYRARYYDGRISNDHGRNSRLFFNI 38
           SL NNY    Y+   +N +  N +L++NI
Sbjct: 84  SLSNNYNYSNYNNYNNNYNNYNKKLYYNI 112


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 184  VHWARGHNGGVSHDHRGYT 128
            +HW  GHNGG S    GYT
Sbjct: 1422 LHWKSGHNGGAS--LTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 184  VHWARGHNGGVSHDHRGYT 128
            +HW  GHNGG S    GYT
Sbjct: 1418 LHWKSGHNGGAS--LTGYT 1434


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 166 HNGGVSHDHRGYTRSLGNNYRARYYD 89
           +N   ++++  Y  +  NNY+  YY+
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYN 355


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 148 HDHRGYTRSLGNNYRARYYD 89
           H++  Y  +  NNY+  YY+
Sbjct: 91  HNNNNYNNNNYNNYKKLYYN 110


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -1

Query: 148 HDHRGYTRSLGNNYRARYYD 89
           +++  Y  +  NNY+  YY+
Sbjct: 335 NNYNNYNNNYNNNYKKLYYN 354


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 151 SHDHRGYTRSLGNNYRARYYD 89
           ++++  Y +   NNYR  YY+
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYN 110


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 VIWLFFYILEMISNDNWFHSDWLDGTDDDRL 388
           V+ L  Y+L+  S    F     DGT++D L
Sbjct: 578 VVALVLYLLDRFSPFGRFKLANTDGTEEDAL 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,222
Number of Sequences: 438
Number of extensions: 1509
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)