Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0643
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.043
At2g05440.2 68415.m00575 glycine-rich protein                          31   0.53 
At2g05440.1 68415.m00574 glycine-rich protein                          31   0.53 
At1g27090.1 68414.m03302 glycine-rich protein                          29   1.6  
At3g63100.1 68416.m07087 glycine-rich protein                          29   2.8  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -1

Query: 238 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 107
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 214 HGGHQGHVTNV-HWARGHNGGVSHDHRGY 131
           HGGH GH     H   GHNGG  H   GY
Sbjct: 47  HGGHGGHGGGGGHGHGGHNGGGGHGLDGY 75



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 238 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 146
           H G   H HGGH G     H   G+ GG  H
Sbjct: 53  HGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 214 HGGHQGHVTNV-HWARGHNGGVSHDHRGY 131
           HGGH GH     H   GHNGG  H   GY
Sbjct: 47  HGGHGGHGGGGGHGHGGHNGGGGHGLDGY 75



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 238 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 146
           H G   H HGGH G     H   G+ GG  H
Sbjct: 53  HGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 232 GRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 83
           GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 344 GRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 220 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 53
           HD+G    H  + H   GH  G  H   G+ R  G+     +  G     HGR+ R
Sbjct: 62  HDYGRDCCHCDHCH---GHGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -1

Query: 238 HNGRVSHDHG-GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 107
           H     H HG GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 94  HGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/62 (29%), Positives = 23/62 (37%)
 Frame = -1

Query: 238 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 59
           H     H H  H GH       RGH  G  H HR + R   +     ++ G   + H R 
Sbjct: 75  HGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGH-GHHHHRG 132

Query: 58  SR 53
            R
Sbjct: 133 HR 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,053,671
Number of Sequences: 28952
Number of extensions: 110038
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)