Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0642
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 0.27
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 0.82
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 26 3.3
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 25 4.4
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.4
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 25 5.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 5.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.6
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 7.6
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 29.5 bits (63), Expect = 0.27
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -1
Query: 144 INVVVGLNCKSFRIWSSGRPTNLRNPSK 61
+N + GLN KS+R+ +S P+NL NP++
Sbjct: 1369 VNTIGGLNPKSYRLITS--PSNLTNPTR 1394
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 0.82
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 17 MSFLGKKYTFDREENFDGFLKFVGLPEDQIRKLLQF--KPTTTLIKEGDKYK-TITVDSN 187
+S G + + + ++G+PEDQ RK F +++L+K+ ++K D
Sbjct: 985 LSIAGNSSLWQARKGLASGISYLGIPEDQKRKTFSFDTSKSSSLLKKLYRFKHDPNPDVA 1044
Query: 188 GTKETVFESGVPFD 229
T ++++ VP D
Sbjct: 1045 KTMGEIWDTLVPSD 1058
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 223 FRRNHRWCIDEKTTYTVDGN 282
FR++H+ C+ + T +V GN
Sbjct: 135 FRKHHQECVKRRATISVQGN 154
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 241 WCIDEKTTYTVDGNTVTHVVENPNG 315
W + +KT+ +D N TH++ + G
Sbjct: 384 WSLFKKTSKVIDDNAATHLIRHSLG 408
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 220 AFRRNHRWCIDEKTTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADKWD 384
AF R + W +E G T+ + + G + + + G+T T A +WD
Sbjct: 42 AFDRRYHWVWEEDRRCLNLGKTLASTIHHKGGNLSLQWQRGNT---TTHIATRWD 93
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -1
Query: 156 SPSLINVVVGLNCKSFRIWSSGRPTNLRNPSKFSSLSNVYFLPKKDMV 13
S SL+ ++G+N F +W + R ++L + ++ N F+ M+
Sbjct: 76 SRSLVLSIIGINVGVFALWRAPRFSHLNRFLQKYAVMNPIFINMPSMI 123
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = -1
Query: 303 LYNMSYGVSINCVRGFFVNTPSMVSSKGTPDSKTVSFVPLLSTVMVLYLSPSLINVVVGL 124
++ + ++I C +FV + + +SFVP+L + ++LY + I++ V +
Sbjct: 579 IFALVVSMAIYCTAAYFVWQKKVERKLWYLTNSKLSFVPILVSFIILYNTMVPISLYVSM 638
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 48 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTAT 188
++ KTS S L P+T S ++ H + + P PST+T
Sbjct: 812 VQPKTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 7.6
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 36 NTHSIEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH*SRKATNTRPSPSTA---TVQRRQF 206
++ S +S S S+ ++ T S + SSS S ++++RPS S++ T+ F
Sbjct: 193 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS---SSSSSSSRPSSSSSFITTMSSSTF 249
Query: 207 LSPVCLSTKPS 239
+S V ++ S
Sbjct: 250 ISTVTVTPSSS 260
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 48 IEKKTSMGSLSLSVSPKTRSGNFCSSSLQLH 140
++KK + +LSLS SP S F SS H
Sbjct: 650 LDKKKMLETLSLSDSPNPESITFISSKFVDH 680
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 307 DSLQHELRCFHQLCTWFFRQYTIDG 233
DS L C + +W + +YTIDG
Sbjct: 382 DSSDVVLLCVKKAASWKYYKYTIDG 406
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 294 MSYGVSINCVRGFFVNTPSMVSSKGTPDSKTVSFVPLLSTVMVLY 160
++ VSI V V TPS+V K S+ ++F+ ++ VL+
Sbjct: 98 LNVAVSIFYVLYILVETPSVVLVKRIKASRMLAFISFAWSMTVLF 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,717
Number of Sequences: 5004
Number of extensions: 45049
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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