Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0642
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672...    29   1.4  
05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836           28   3.3  
06_03_1470 + 30371391-30372353                                         28   4.3  
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    28   4.3  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    27   10.0 
11_01_0437 - 3347960-3349246                                           27   10.0 
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    27   10.0 

>03_03_0242 +
           15765726-15765965,15766703-15766874,15767056-15767209,
           15767287-15767350,15767533-15767640,15767817-15767942,
           15768037-15768269,15768565-15768787
          Length = 439

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 181 VDGDGLVFVAFLDQCSCRLELQKFPDLVFGETDKLKE 71
           VDG G+     L +  C  ++++ PD++FGE  K K+
Sbjct: 7   VDGSGVPLAVLLKRELCNQKVER-PDMLFGEASKSKK 42


>05_02_0091 + 6519799-6519918,6520521-6520682,6520732-6520836
          Length = 128

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 PSPSTATVQRRQFLSPVCLSTKPSMV 245
           PSPS       +F SP+CLST+P+ +
Sbjct: 26  PSPSLPVTDFEEF-SPICLSTQPAFL 50


>06_03_1470 + 30371391-30372353
          Length = 320

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 312 IGILYNMSYGVSINCVRGFFVNTPSMVSSKGTPDSKT 202
           I I YN +YG +   +    +N P +V+S  T   KT
Sbjct: 192 IQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKT 228


>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +2

Query: 26  LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQ--FKPTTTLIKEGDKYKTITVDSNGTKE 199
           +G   + +R  +FD   +   +    + K++   + P  T  +   +++ I +   G  +
Sbjct: 470 VGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLAD 529

Query: 200 TVFESGVPFDET 235
           T    G+PFD T
Sbjct: 530 TFILLGMPFDST 541


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 3   WA-TQPCLSWVKNTHSIEKKTSMG 71
           WA T PCLSW  NT    K  ++G
Sbjct: 278 WASTIPCLSWQYNTEKTPKVLAVG 301


>11_01_0437 - 3347960-3349246
          Length = 428

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 201 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWSS 94
           ++F+PLLS++ +L L P+L + + G       ++SS
Sbjct: 111 LAFLPLLSSLYLLRLPPALPSSLSGFEAVLLAVYSS 146


>06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-388276,
            388355-388482,388914-389048,389122-389250,389620-389787,
            389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 315  AIGILYNMSYGVSINCVRG--FFVNTPSMVSSKGTPD 211
            A G  YN     S+N + G  FFV TP+ V+S+  PD
Sbjct: 1287 ATGPSYNKPATPSMNPLSGATFFVPTPATVASEQIPD 1323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,150
Number of Sequences: 37544
Number of extensions: 271595
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)