Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0642
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   3.4  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   4.4  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)                    27   7.7  
SB_26349| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_51553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1036

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 26  LGKKYTFDREENFDGFLKFVGLPEDQIRKLLQFK 127
           L +KY F+R E F+  ++ +GL  D +  L QF+
Sbjct: 746 LSQKYPFERAEKFNKGIRKLGLSPDGLTYLDQFR 779


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 185  NGTKETVFESGVPFDETIDGVLTKKPRTQLM 277
            NG K+ + +  + FD+  D +  KKP+ +LM
Sbjct: 1079 NGVKKAIVKKSIGFDDYKDCLFDKKPQMRLM 1109


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 318 CAIGILYNMSYGVSINCVRGFFVNTPSMVSSKGTPD 211
           C IG  Y       INC  G ++N    +  K  PD
Sbjct: 697 CPIGTYYEKDQEKCINCPEGSYMNHEGALECKACPD 732


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = -1

Query: 246 TPSMVSSKGTPDSKTVSFV-PLLSTVMVLYLSPSLI--NVVVGLNCKSFRIWSSGRPTNL 76
           +PS VS+  T DS +VSF   LLST ++  +S S++  N  V     + R+ +S   ++ 
Sbjct: 529 SPSYVSNMTTLDS-SVSFTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLVTSTISSST 587

Query: 75  RNPSKFSSLSNV 40
            N S  S+ S++
Sbjct: 588 VNVSAISTTSSI 599


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 89   LPEDQIRKLLQFKPTTTLIKEGDKYKTITVD-SNGTKETV 205
            LP D    + +F P+T   +EG+K  ++T+  S GTK  +
Sbjct: 1111 LPSDDPYGVFKFTPSTLTTQEGNKTVSLTITRSLGTKGAI 1150


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 122  FKPTTTLIKEGDKYKTITVDSNG--TKETVFESGVPFDETIDGVLTKKP 262
            FKP + + KE D   T+TV   G  T+E   +  V     IDG    KP
Sbjct: 1976 FKPDSVIFKESDGTVTLTVARRGDTTREHKVKVAVIDGSAIDGKDFTKP 2024


>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
          Length = 368

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 201 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIW 100
           +S  P+L +V  L LSP+L +V + L C   R+W
Sbjct: 1   LSVAPVLRSVQTLSLSPALRSVALRLVC---RVW 31


>SB_26349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 GTKETVFESGVPFDETIDGVLTKKPRTQLM 277
           G K  V +  + FD+  D V  KKP+ +LM
Sbjct: 12  GVKRAVVKKSIGFDDYKDCVFGKKPQMRLM 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,310
Number of Sequences: 59808
Number of extensions: 329994
Number of successful extensions: 1091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)