Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0642
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55940.1 68414.m06416 cytochrome P450, putative similar to SP...    31   0.39 
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER...    29   2.1  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   2.7  
At5g63540.1 68418.m07975 expressed protein  ; expression support...    27   4.8  
At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    27   4.8  
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi...    27   6.3  
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con...    27   6.3  
At2g22720.3 68415.m02692 expressed protein                             27   6.3  
At2g22720.2 68415.m02691 expressed protein                             27   6.3  
At2g22720.1 68415.m02693 expressed protein                             27   6.3  
At1g58210.1 68414.m06610 kinase interacting family protein simil...    27   6.3  
At1g32030.1 68414.m03940 expressed protein contains Pfam profile...    27   6.3  
At5g24070.1 68418.m02827 peroxidase family protein similar to ca...    27   8.4  

>At1g55940.1 68414.m06416 cytochrome P450, putative similar to
           SP:Q42569 from [Arabidopsis thaliana]
          Length = 639

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 256 KTTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADKWDGVAYRYYKV*INSIYL 432
           +TT T+   TV  + ENP      KRE+   E  +   ADK  GV ++ Y+  +N  ++
Sbjct: 439 ETTSTMTALTVKFIAENPKVLMELKREH---ETILQNRADKESGVTWKEYRSMMNFTHM 494


>At4g05310.1 68417.m00809 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 415

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 89  LPEDQIRKLLQFKPTTT--LIKEGDKYKT-ITVDSNGTKETV 205
           L E++IRK+  ++P TT  + K  D ++T  +  SN  KETV
Sbjct: 111 LTEEEIRKIYSYRPETTQDISKIQDAHQTEESPPSNSVKETV 152


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 158 KYKTITVDSNGTKETVFESGVPFDETIDGVLTKKPRTQLME 280
           KYKT + D++  KE + E G P     DG+   K  T  ME
Sbjct: 216 KYKTFS-DASAAKEYIQEQGAPIVIKADGLAAGKGVTVAME 255


>At5g63540.1 68418.m07975 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 258 NHVHS*WKHRNSCCRESQWHSNIQKGIR*HRTKSYYLGR*M 380
           NHVH    H NS    +  H+   +GI  H T+++   R M
Sbjct: 269 NHVHDTGNHVNSSASGNASHTQANQGIPVHVTRTHNSSRAM 309


>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 33  KNTHSIEKKTSMG----SLSLSVSPKTRSGNFCSSSLQLH*S-RKATNTRPSPSTATVQR 197
           +N  ++ +K+S+     +L   +SP TR+GNFC  S +   S  +  N     STA   R
Sbjct: 365 RNGSNLARKSSISPKRVTLQAFLSP-TRNGNFCKKSPKASISPTRVCNKSQKLSTAAKFR 423

Query: 198 RQFLSPVCLSTK 233
           R F SP  L+ +
Sbjct: 424 RSF-SPSRLAMR 434


>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA binding protein PufA
           [Dictyostelium discoideum] gi|5106561|gb|AAD39751
          Length = 524

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 241 IDGFVERHTGLKNCLLCTVAVDGDGLVFVAFLDQCSCRLELQKFPD 104
           +DG  +     ++ L     VD  G V++   DQ  CRL LQKF D
Sbjct: 220 LDGSAKCMKNKEDSLDLASMVDSYGSVYLMAKDQLGCRL-LQKFVD 264


>At3g14810.1 68416.m01871 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 853

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 105 SGNFCSSSLQLH*SRKATNTRPSPSTATVQRRQFLSPVCLSTKP 236
           SG+  S  ++L+ +   +NT P P+TA+   R+ L+ +  S+ P
Sbjct: 101 SGDEISLDVELNMAELQSNTPPRPATASNTPRRGLTTISESSSP 144


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 120 SSSLQLH*SRKATNTRPSPSTATVQRRQFLS 212
           SSS  +   R ATN RP PS ++++R+  +S
Sbjct: 382 SSSNGVGPGRSATNARPLPSKSSLERKPSIS 412


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 120 SSSLQLH*SRKATNTRPSPSTATVQRRQFLS 212
           SSS  +   R ATN RP PS ++++R+  +S
Sbjct: 485 SSSNGVGPGRSATNARPLPSKSSLERKPSIS 515


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 120 SSSLQLH*SRKATNTRPSPSTATVQRRQFLS 212
           SSS  +   R ATN RP PS ++++R+  +S
Sbjct: 153 SSSNGVGPGRSATNARPLPSKSSLERKPSIS 183


>At1g58210.1 68414.m06610 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) {Petunia
           integrifolia}
          Length = 1246

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 238 RWCIDEKTTYTVDGNTVTHVVENPNGTAT-FKREY 339
           R C +++      G   T+V  NPNG+ T F+ EY
Sbjct: 304 RCCREQRAMLIHGGGQATYVQNNPNGSNTIFRVEY 338


>At1g32030.1 68414.m03940 expressed protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313); expression
           supported by MPSS
          Length = 333

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 259 TTYTVDGNTVTHVVENPNGTATFKREYGDTELKVTISADKWDG 387
           +T   + NT      NPN   + KR++ D+E K   +   W G
Sbjct: 141 STLLAEYNTEMANPPNPNSETSLKRKHSDSEPKKAKTPYSWKG 183


>At5g24070.1 68418.m02827 peroxidase family protein similar to
           cationic peroxidase, Peanut [Arachis hypogaea]
           GP|166475|gb|AAA32676; contains Pfam profile PF00141:
           Peroxidase
          Length = 340

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = -1

Query: 201 VSFVPLLSTVMVLYLSPSLINVVVGLNCKSFRIWSSGRPTNLRNPSKFSSLSNVYFLPKK 22
           V+F PLL+ V++     + +    GLN     +W   + TN  + ++      V    K 
Sbjct: 4   VNFFPLLALVVISLAGKATVEAATGLNPPVKLVWHYYKLTNTCDDAETYIRYQVEKFYKN 63

Query: 21  DMVALPK 1
           D    PK
Sbjct: 64  DSSIAPK 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,048
Number of Sequences: 28952
Number of extensions: 231503
Number of successful extensions: 775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)