Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0640
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      27   0.79 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        27   1.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   1.8  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   3.2  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    25   5.5  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    24   7.3  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    24   9.7  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 210 YNLEKYQSQVSRVLETSPNTSSTDFCPDLLMRNNTC 317
           +NL+K  S V  V+E++P+T+   F P+L+     C
Sbjct: 19  HNLQKMSSYVHEVMESNPSTNLILF-PELITSGYEC 53


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 125 NRQLKFDVPDGVSVNTDSDNSTSANAHV 42
           +RQ+KF   D +S++   DN TSA+  V
Sbjct: 339 SRQVKFSPADVISLSGCKDNQTSADTSV 366


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 177 GRISDFLNKLPYNLEKYQSQVSRVLETSPNTSSTDF--CPDLLMRNNTCFIYKHSLQFEN 350
           GR S +LN  P+N++++ +    V  TS    +T+         + N  + YK  +   +
Sbjct: 210 GRFSFYLNSSPFNVKEHAAITIAVSLTSSTAYATNILSAQTSFYKQNLSWGYKILIVLTS 269

Query: 351 KMFSY 365
           +M  Y
Sbjct: 270 QMLGY 274


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 84  DGYTVRNVELELSIGEINSEIQLNLFGREVGGRISDFL 197
           D Y   NV   LS+G++  +++L       G R+SD L
Sbjct: 300 DTYQRTNVPTVLSLGDVCGKLELTPVAIAAGRRLSDRL 337


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 116 LKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVFGQ 6
           LK   P+G+    D   + ++   +G+G  S S F Q
Sbjct: 10  LKQGFPEGLGEYVDPSGNPNSQVRIGYGQDSVSRFQQ 46


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 310 IPVLFINIAYNSKIKCSLIKK 372
           +P+  +N+AYN ++K S + K
Sbjct: 22  LPISSLNVAYNLQLKTSFVWK 42


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 393 FFFLRI--VFFNKRTFYFRIVSYVY 325
           ++F+R+  +F N  T  F ++S+VY
Sbjct: 253 YYFVRLPWLFLNPTTLLFLLISFVY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,237
Number of Sequences: 5004
Number of extensions: 23746
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)