Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0640
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 29 1.0
03_06_0126 + 31865339-31867943,31868176-31868660 28 2.3
07_03_1176 + 24567720-24570932 28 3.1
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485... 28 3.1
05_06_0263 + 26752759-26754393 28 3.1
02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764... 27 4.1
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 27 5.4
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 27 7.1
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 26 9.4
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 26 9.4
01_06_0928 + 33085403-33089224 26 9.4
01_06_0716 - 31425189-31426460 26 9.4
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 29.5 bits (63), Expect = 1.0
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = -2
Query: 185 DASSDLT---PEQVQLDFRVDFSNRQLKF----DVPDGVSVNTDSDNSTSANAHVGHGDS 27
D SS ++ P V LDF + N K DV D S + ++ +AH GHGDS
Sbjct: 353 DVSSQVSQHDPHSVPLDFEPENQNPPFKHLSRSDVSDA-SEGAEVQHAREHSAHWGHGDS 411
Query: 26 SRSVFG 9
V G
Sbjct: 412 VNLVSG 417
>03_06_0126 + 31865339-31867943,31868176-31868660
Length = 1029
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 108 ELELSIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEKYQ 230
E+ S E+ + LNLF ++ G I DF+ LP +LE Q
Sbjct: 303 EIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLP-SLEVLQ 342
>07_03_1176 + 24567720-24570932
Length = 1070
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 120 SIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEK 224
SIG++N I L+L +GG I + LP NLE+
Sbjct: 544 SIGQLNYLISLDLSRNHLGGEIPTSVKNLP-NLER 577
>06_01_0665 -
4855870-4855956,4856407-4856482,4856794-4856910,
4857062-4857127,4858578-4858670,4858788-4858909,
4859810-4860365,4860485-4860628,4860698-4860831,
4861003-4861100,4861172-4861353,4861464-4861540,
4862083-4862305,4862580-4862745,4862836-4863040,
4864981-4865199
Length = 854
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 381 RIVFFNKRTFYFRIVSYVYK*NRYYCA 301
R+ + KR YF ++ Y+YK + ++CA
Sbjct: 495 RMTYIVKRRKYFYLMGYLYKGSIFFCA 521
>05_06_0263 + 26752759-26754393
Length = 544
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 141 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVS 242
+++ NLFG E G +S L+KLP +E Y S ++
Sbjct: 333 DLRDNLFGVEAGLALSKTLSKLPDLVELYLSDLN 366
>02_02_0191 +
7642942-7642944,7643405-7643513,7643578-7643886,
7644697-7644839
Length = 187
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 209 LQLRKIPIPGQPGF 250
L L K+P+PG+PGF
Sbjct: 112 LGLEKVPVPGEPGF 125
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 123 IGEINSEIQLNLFGREVGGRISDFLNKLP 209
IG + S Q+NL + G I D L KLP
Sbjct: 156 IGNLTSLSQINLTDNHLSGAIPDELGKLP 184
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 128 SNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRSVFG 9
SNR F P G+ V+ D TS V H D+ +FG
Sbjct: 643 SNRY-SFKSPLGLPVDIHEDGMTSEQQKVDHSDTEYFLFG 681
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 107 DVPDGVSVNTDSDNSTSANAHVGHGDSSRSVFGQF 3
D P+ + D+ S N GHGDSS ++ F
Sbjct: 450 DSPETEAAGDDAKESEGKNNPHGHGDSSEAISVMF 484
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 345 RIVSYVYK*NRYYCASEGLDRSLLMMYSETSPKPG 241
R+++ V +R C GL +SLL ++ + S PG
Sbjct: 301 RLINSVQLNDRMVCVKSGLRKSLLNVFHDGSCHPG 335
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 277 VDDVFGDVSKTRLTWDW 227
+DDV+ D SK+ WDW
Sbjct: 264 LDDVWFDESKSETEWDW 280
>01_06_0716 - 31425189-31426460
Length = 423
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 102 NVELELSIGEINSEIQLNLFGREVGGRISDFLNKLP 209
N + SIG++ S ++L + GRI D ++ LP
Sbjct: 237 NGNIPTSIGDLISLTTIDLSNNSISGRIPDTVSTLP 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,379,938
Number of Sequences: 37544
Number of extensions: 136375
Number of successful extensions: 449
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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