Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0640
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)                    30   0.77 
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_57253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)                      27   4.1  
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               27   5.4  
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)                   27   7.2  
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)                 27   7.2  
SB_18497| Best HMM Match : DUF1472 (HMM E-Value=7.7)                   27   7.2  
SB_45595| Best HMM Match : rve (HMM E-Value=7.9e-06)                   27   7.2  
SB_44218| Best HMM Match : rve (HMM E-Value=1.5e-12)                   27   7.2  
SB_38801| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_35389| Best HMM Match : SAM_1 (HMM E-Value=3.5e-10)                 27   7.2  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 27   7.2  
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)                    27   7.2  
SB_6948| Best HMM Match : GATase_3 (HMM E-Value=2)                     27   7.2  
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_42130| Best HMM Match : rve (HMM E-Value=5.9e-13)                   26   9.5  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   26   9.5  
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             26   9.5  

>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
          Length = 510

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 164 PEQVQLDFRVDFSNRQLK--FDVPDGVSVNTDSDNSTSANAHVGHGDSSR 21
           P+   +  +VD +NR  K  F+ P      T+SD+ T   A +GH  S+R
Sbjct: 344 PQGKPIKIKVDMNNRLGKGEFESPVPPCSPTESDDGTQGVAEIGHTGSAR 393


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 143 FRVDFSNRQLKFDVPDGVS-VNTDSDNSTSANAHVGHGD 30
           FRV F+N++   +  DG S V+++S++ + A +  G G+
Sbjct: 370 FRVPFNNQETSDEESDGSSEVSSESESGSDAESEEGEGE 408


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/56 (19%), Positives = 29/56 (51%)
 Frame = +3

Query: 108 ELELSIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLETSPNTSS 275
           ELE +        +L     +V GR+  +++ + +++ K++  +  +L T  N+++
Sbjct: 461 ELEATFVSATKTHELLAIQDQVAGRVEQYMDVIRFSIRKFRHDLDEILSTLRNSNA 516


>SB_57253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 173 RRTHQRLLEQAPLQLRKIPIPGQPGFGDVSEYI 271
           R + ++  E A   ++ IP+P   G GD+  YI
Sbjct: 127 RGSDEKFYEMAQQMVQSIPVPTYTGVGDIEGYI 159


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 117  LSIGEINSEIQLNLFGREVGG 179
            LSI   N +I+L+L GR+VGG
Sbjct: 1101 LSINPTNGQIELSLKGRDVGG 1121


>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 174 GGRIS-DFLNKLPYNLEKYQSQVSRVLETSPNTSSTDFCPDLLMR 305
           GG+ S + +N  PY    + S  +    TSPN SST++   +L +
Sbjct: 659 GGKPSKNTVNMQPYFAPVWGSNTNTTTTTSPNMSSTNYTSSVLTK 703


>SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)
          Length = 151

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 141 EIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLE 254
           ++++NL  + +GGRI+  +++L + +    S+  RVL+
Sbjct: 85  KLEINLSKKLIGGRINKKIDELNWKISNASSKTLRVLK 122


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 150 LNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLETSPNTSST 278
           L L GR VG       N L +NLE   + ++ V+ T  NT+ST
Sbjct: 113 LVLVGRRVGSPCG---NTLVFNLETCINNITPVVRTQYNTTST 152


>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185 QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
           QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 868 QRKQQKEPMQLREVPLLPWQHIASDIGEY 896


>SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)
          Length = 651

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185 QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
           QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 432 QRKQQKEPMQLREVPLLPWQHIASDIGEY 460


>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
          Length = 540

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +3

Query: 90  YTVRNVELELSIGEINSEIQLNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLETSPNT 269
           Y  RNVEL+ +  ++       L+ R+  G I+DF  +   ++     +++  L  S + 
Sbjct: 280 YAYRNVELKRTFWKVLESCLCGLYKRDRPGSINDFHRRSEVHMPGCPRKMNSTLARSAHV 339

Query: 270 SST 278
           +++
Sbjct: 340 NAS 342


>SB_18497| Best HMM Match : DUF1472 (HMM E-Value=7.7)
          Length = 245

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 87  GYTVRNVELELSIGEINSEI-QLNLFGREVGGRISDFLNKLPYNLEKYQSQVSRVLETSP 263
           G   RN+ + + I  IN  +    + G     R SDFL K   NL+  +  +   L  S 
Sbjct: 157 GQRGRNITVTMEISPINGLVFHSAIIGGMNAQRFSDFLTKARLNLDPDKMVIFIYLRWSA 216

Query: 264 NTS 272
            TS
Sbjct: 217 TTS 219


>SB_45595| Best HMM Match : rve (HMM E-Value=7.9e-06)
          Length = 200

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185 QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
           QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 61  QRKQQKEPMQLREVPLLPWQHIASDIGEY 89


>SB_44218| Best HMM Match : rve (HMM E-Value=1.5e-12)
          Length = 507

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185 QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
           QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 207 QRKQQKEPMQLREVPLLPWQHIASDIGEY 235


>SB_38801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185 QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
           QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 206 QRKQQKEPMQLREVPLLPWQHIASDIGEY 234


>SB_35389| Best HMM Match : SAM_1 (HMM E-Value=3.5e-10)
          Length = 246

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 219 EKYQSQVSRVLETSPNTSSTDFCPDLLMRNNTCFIYKHSLQFENKMF 359
           +K  S+   VL   P+T +T  C D++M     F+ K  LQ+ ++ F
Sbjct: 13  QKLSSEEEYVLNLDPSTVATWSCDDVVMN----FLNKAGLQYLSEQF 55


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185  QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
            QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 1478 QRKQQKEPMQLREVPLLPWQHIASDIGEY 1506


>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
          Length = 1358

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 185  QRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
            QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 1058 QRKQQKEPMQLREVPLLPWQHIASDIGEY 1086


>SB_6948| Best HMM Match : GATase_3 (HMM E-Value=2)
          Length = 180

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 216 LEKYQSQVSRVLETSPNTSSTDFCPDLLM 302
           L  +Q QV+++ + +   +S++FCPD L+
Sbjct: 149 LISHQDQVTKLPDNATLLASSEFCPDCLV 177


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 164 PEQVQLDFRVDFSNRQL 114
           PE+++ DFRVDF NR +
Sbjct: 419 PERLEDDFRVDFFNRYI 435


>SB_42130| Best HMM Match : rve (HMM E-Value=5.9e-13)
          Length = 975

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 116 AVYWRNQL*NPIEPVRA*GR-RTHQRLLEQAPLQLRKIP-IPGQPGFGDVSEY 268
           AVYW     N  E +    +  + QR  ++ P+QLR++P +P Q    D+ EY
Sbjct: 651 AVYWPGLSANISEMITKCDKCLSLQRKQQKEPMQLREVPLLPWQHIALDIGEY 703


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 84   DGYTVRNVELELSIGEINSEIQLNLFGREVGGRISDFLN 200
            DGYT+R  ELEL  G I     + +    V  R S  L+
Sbjct: 1482 DGYTLRTKELELQSGGILVASNVTILSENVYVRESSHLS 1520


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 173 DLTPEQVQLDFRVDFSNRQLKFDVPDGVSVNTDSDNSTSANAHVGHGDSSRS 18
           +LT +    D     ++    F+  +  S N++SDNSTS N+   + +S  S
Sbjct: 358 NLTSDNPNTDNSGSDNSSSGNFNSDNSTSDNSNSDNSTSDNSSSDNSNSDNS 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,804,523
Number of Sequences: 59808
Number of extensions: 167959
Number of successful extensions: 525
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)