Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0640
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    28   2.7  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    28   2.7  
AF125459-1|AAD12837.1|  189|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    26   8.4  

>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 213 NLEKYQSQVSRVLETSPNTSSTDFCPDLLMRNNTCFIYKHSLQFENKMFSY*KKQ 377
           + E    +   +L  S + S TDF  D L++ +  FIY   + F+    S  K Q
Sbjct: 686 HFESVSERAFGLLYASLSKSETDFSADQLVKFSAMFIYAAQVNFDKSTPSTSKSQ 740


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever shorter
            telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 213  NLEKYQSQVSRVLETSPNTSSTDFCPDLLMRNNTCFIYKHSLQFENKMFSY*KKQ 377
            + E    +   +L  S + S TDF  D L++ +  FIY   + F+    S  K Q
Sbjct: 843  HFESVSERAFGLLYASLSKSETDFSADQLVKFSAMFIYAAQVNFDKSTPSTSKSQ 897


>AF125459-1|AAD12837.1|  189|Caenorhabditis elegans Hypothetical
           protein Y25C1A.6 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 188 ADASSDLTPEQVQLDFRVDFSNRQLKFD---VPDGVSVNTDSDN 66
           ++ S  LTPE +QLD  + +S  +L+FD    P+ +  N + D+
Sbjct: 110 SEESYPLTPEPIQLDTCLTWSPVELQFDPFAEPEPIFYNEEMDS 153


>Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical
           protein T07G12.4 protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 292 SGQKSVDDVFGDVSKTRL 239
           SG K++DD+FG + K R+
Sbjct: 382 SGNKTIDDIFGTLLKMRM 399


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 292 SGQKSVDDVFGDVSKTRL 239
           SG K++DD+FG + K R+
Sbjct: 444 SGNKTIDDIFGTLLKMRM 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,471,539
Number of Sequences: 27780
Number of extensions: 132475
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)