Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0639
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   3.9  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    26   5.2  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.0  

>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 339 FNDLSAKILLCQNTVVCTWY 280
           FN +  KI+L  NT+VC +Y
Sbjct: 25  FNPILLKIILFLNTIVCIFY 44


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 376 IWHQISDNCKHNFQYSCIY 432
           +W+QI D    N  YSC++
Sbjct: 449 VWNQIEDTISVNSHYSCLF 467


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 376 IWHQISDNCKHNFQYSCIYFPLYIQFRIHF 465
           +WH     C  N   +   F LY QF+  F
Sbjct: 132 LWHSFKGMCGRNVPATAFQFVLYEQFKKKF 161


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -1

Query: 549 SIYTYT*LVTDTIISVNTFSVDIYDNVLEMNSE----LNIKWEINTTILKIMFTIIRYL 385
           +I  Y     +TI+S+  +S+  YD  L +  +    L + ++I+  ++  ++T+I YL
Sbjct: 20  NILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYL 78


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 548 ER*INLRSNYSPYFTPTLPWT 610
           E+ ++ R+++SPY +PT+ +T
Sbjct: 79  EKLMSTRTSHSPYISPTMSYT 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,972
Number of Sequences: 5004
Number of extensions: 49371
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)