Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0639
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    29   2.3  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   7.0  

>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = -1

Query: 567 LKFIYLSIYTYT*LVTDTIISVNTFSVDIYDNVLEMNSELNIKWEINTTI-LKIMFTIIR 391
           L ++YL    Y   +   + + N F +D++DN L    +++  W++   + L +    + 
Sbjct: 572 LSYLYLDSNKYEGSIPQNLSAKNLFVMDLHDNKLSGKLDISF-WDLPMLVGLNLADNTLT 630

Query: 390 YLVPYEYAN*LFNEMIHF--NDLSAKILLCQNTVVCTWYG*VIPPNVVFGFYISVF 229
             +  +  N  +  +I F  N LS  +  C   ++   +G V   +++  FY+  F
Sbjct: 631 GEISPDICNLQYLRIIDFSHNKLSGSVPACIGNIL---FGDVHDHDILQIFYVEPF 683


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 528 LVTDTIISVNTFSVDIYDNVLEMNSELNIKWEINTT 421
           +V   IIS  T+S D  +NV E  S  N + +INT+
Sbjct: 335 IVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTS 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,249
Number of Sequences: 37544
Number of extensions: 235842
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)