Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0637
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 57 2e-09
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 2.6
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 27 3.5
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 3.5
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 27 3.5
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.5
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 27 3.5
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 27 3.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 6.0
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 8.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 8.0
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/70 (40%), Positives = 45/70 (64%)
Frame = +2
Query: 38 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 217
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 218 ERAEVTPPED 247
+ A PE+
Sbjct: 84 KEAGTKAPEE 93
Score = 57.2 bits (132), Expect = 2e-09
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 259 LFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSRGILQRLYGKHIISV 435
L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R L R +
Sbjct: 97 LMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLT 156
Query: 436 ANEIGRLPPTFLDASQLATAIL 501
IG P+F +A Q+++ IL
Sbjct: 157 FAHIGGASPSFEEALQISSNIL 178
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 531 IIYNKFKSVVSYAQSDLPLYTKKSIESA 614
++YNKF S VS+ LYT K+I +
Sbjct: 189 LVYNKFASAVSFETVMKNLYTTKAINES 216
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 286 GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVA 438
G+ GA+ TGV +N L E GA ++ +IC +L +Y ++VA
Sbjct: 92 GIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMVLMTVYSLGELAVA 141
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 454 LPPTFLDASQLATAILTSDTSLVPERSFTTSSSLWSRTPSPTCPSTL 594
+P T+++A + A T V + SFT+ SL P C TL
Sbjct: 407 VPQTYVNAKPVVFARFNMHTCKVQDVSFTSPFSLIIDNEGPLCAFTL 453
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 454 LPPTFLDASQLATAILTSDTS-LVPERSFTTSSSLWSRTPSPTCPST 591
+PPT SQ + + + S L P+ + S+ SR PSP CPST
Sbjct: 274 IPPT---PSQFSAFMYQNQQSYLSPQSHYENPLSISSR-PSPCCPST 316
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 703 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 620
+R+EQ+R Q+E + L+ QR++RS+
Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 593 SVEGQVGLGVRDHRLELVVNDLSGTKLVSEVRIAVAS*LASKKVGG 456
SV VG+ R+E ++N+L+G K + E+ A LA+ GG
Sbjct: 25 SVLSTVGIEAESERIETLINELNG-KDIDELIAAGNEKLATVPTGG 69
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 433 VANEIGRLPPTFLDASQLATAILTSDTSLVPERSFTTSSSL 555
V ++ G +PP L + + +L S+ LVPE T S+
Sbjct: 114 VMSQHGLVPPAMLVGNGIEKLLLHSNIKLVPESHLITERSM 154
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 413 TESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRIRVWFRKDHLQQVQVCGLVRPVRLAP 586
+ + L L+ D LLS+++ + L + + F + QQV+ C V P + P
Sbjct: 139 SSDSKLQTLLNLDGQQLLSYSENPFYLFEVKNLSISFHFESPQQVEPCQPVNPFKENP 196
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 268 AMTSDRGLCGAVHTGVSKVIRNRLSE 345
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 499 LTSDTSLVPERSFTTSSSLWSRTPSPTCPSTLRSLLRAP 615
L++ L+P+RS SS + S P+T R L +P
Sbjct: 137 LSNSRKLIPKRSAKFSSMVGSSDTRCNSPTTARGLATSP 175
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 495 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 343
SS ++ V + W + L +TND +++S+ DT R S DV+ F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -2
Query: 486 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 313
+L + ES+++T+ +T + + D R+I D D + +ET+A F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 92 KSVKNIQKITQSMKMVSAAKYTRAERDLK 178
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,063
Number of Sequences: 5004
Number of extensions: 64855
Number of successful extensions: 214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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