Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0637
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 49 3e-06
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 40 0.002
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447... 32 0.51
01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359 30 2.1
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 29 2.7
02_04_0133 + 20101553-20103070 29 3.6
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 28 6.3
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 8.3
06_01_0139 - 1061630-1062226,1062318-1062449,1062945-1063934,106... 28 8.3
>07_03_0571 - 19602755-19603831
Length = 358
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 241
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 242 ED 247
ED
Sbjct: 97 ED 98
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 265 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQR 408
V +T +RGLCG+ + V K R+ E ++ V+ VG K R
Sbjct: 115 VVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR 164
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = +2
Query: 71 KAISIRLKSVKNIQKITQSMKMVSAAK 151
+A+ R+KSV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 253 QQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKH 423
+ + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R +
Sbjct: 118 KNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKDN 176
Query: 424 IISVANEIGRLP 459
I +E+ + P
Sbjct: 177 IEMTVSELQKNP 188
>06_01_0616 +
4467439-4467733,4469232-4469294,4469840-4471176,
4472719-4473086,4473526-4473559,4473978-4474421
Length = 846
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/78 (20%), Positives = 35/78 (44%)
Frame = -2
Query: 453 TSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRG 274
T+ +N +L+V LQ T + D++ F + + G+ A ++
Sbjct: 588 TTSYTANLTSMLTVGQLQPTINELKKGDYVGYQQGSFVQNILKDMGFNEDRLRAYATIDQ 647
Query: 273 HSNKQLLGSSSGGVTSAL 220
++ +GS +GGV++ +
Sbjct: 648 YAEALNMGSDNGGVSAII 665
>01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359
Length = 385
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 366 LDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLGSSSGGVTS 226
+DVLS+ A H G T++ +A T+ H + S GGV+S
Sbjct: 292 IDVLSSFLPRAAAAHHGMTTMGGAAATTTTSHGLNSAI-SGGGGVSS 337
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 581 QVGLGVRDHRLELVVNDLSGTKLVSEV--RIAVAS*LASKKVGGRRPISLATLMMCFPYN 408
++G+ ++ VN G +V E+ R++ +S LASK G PI+ + Y
Sbjct: 345 EIGVECGGSNVQFAVNPADGEVMVIEMNPRVSRSSALASKATGF--PIAKMAAKLSVGYT 402
Query: 407 LCRIPRDLS 381
L +IP D++
Sbjct: 403 LDQIPNDIT 411
>02_04_0133 + 20101553-20103070
Length = 505
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 487 ATAILTSDTSLVPERSFTTSSSLWSRTPSPTCPSTLRSLLRAPQADCVRLSGQRRAP 657
AT + T LVP + +LW+ T +P+ P+ ++ P A L + AP
Sbjct: 118 ATMLPLPSTDLVPNLTLRRLIALWASTAAPSSPAAPSAVGPTPAAAAAELLRRVAAP 174
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = -2
Query: 513 RIRGEDSSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTAR 388
R + +D + LT ++++ ++T DL+ +D + Q ++DT R
Sbjct: 48 RFKNKDLAVLLTQLKDTTYDTEDLLRKFDDQVLRQKMEDTDR 89
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 538 TTSSSLWSRTPSPTCPSTLRSLLRAPQA 621
++SSSL RTPSPT P L LLR P +
Sbjct: 12 SSSSSLSPRTPSPTHP--LPHLLRLPSS 37
>06_01_0139 -
1061630-1062226,1062318-1062449,1062945-1063934,
1064041-1064211
Length = 629
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 454 LPPTFLDASQLATAILTSDTSL-VPERSFTTSSSLWSRTPSPTCPSTLRSLLRA 612
+PPTF L AI+ + L VP F+TSS + S T P T LRA
Sbjct: 480 MPPTFYRV--LLRAIIVAGRPLPVPPTVFSTSSVIASTTVISRLPPTAYQALRA 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,306,452
Number of Sequences: 37544
Number of extensions: 475045
Number of successful extensions: 1494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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