Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0637
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   9e-17
SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        30   2.1  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    29   2.8  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   4.9  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               28   6.4  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   6.4  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)                   28   8.5  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 36/65 (55%), Positives = 53/65 (81%)
 Frame = +2

Query: 77  ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPS 256
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DP 
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 257 NCLLL 271
           + +++
Sbjct: 122 HLIVV 126



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 31/84 (36%), Positives = 56/84 (66%)
 Frame = +1

Query: 250 PQQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHII 429
           P+ L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GDK++ IL R  GK+++
Sbjct: 120 PKHLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNML 179

Query: 430 SVANEIGRLPPTFLDASQLATAIL 501
               ++G+ PP F +A+ LA  IL
Sbjct: 180 MSFMDVGKKPPLFCEATFLAQEIL 203



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/29 (51%), Positives = 25/29 (86%)
 Frame = +2

Query: 620 LTAYDSLDSDVLQSYTEFSLASLLFYALK 706
           +++YD LDS+V++ Y EF+LAS+LF+ +K
Sbjct: 246 MSSYDELDSEVIRCYQEFNLASMLFFGMK 274



 Score = 35.5 bits (78), Expect = 0.042
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 507 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATS 620
           G++F +G + YN F+SVVS+  S   +Y+  ++ +A S
Sbjct: 206 GFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNAAS 243


>SB_12613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 27/121 (22%), Positives = 56/121 (46%)
 Frame = -3

Query: 599 LLSVEGQVGLGVRDHRLELVVNDLSGTKLVSEVRIAVAS*LASKKVGGRRPISLATLMMC 420
           LL ++  + L  R +R++ ++ ++ G +  ++  I +   +     G ++ +S A+ ++ 
Sbjct: 293 LLRLDKDLSLQERLYRVDQIIGEV-GLRRCADTMIGIPGRMRGISGGEKKRLSFASEVLT 351

Query: 419 FPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCWGHLR 240
            P  L       S     +  +   +L+++     T VCT  H+P SEV A  + W   R
Sbjct: 352 DPAILFA-DEPTSGLDAFMAQTVITTLQKMAAQGRTVVCTI-HQPSSEVFAMFDRWDSFR 409

Query: 239 E 237
           E
Sbjct: 410 E 410


>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 327 DHFGYTSV-YSSAQTSVRGHSNKQLLGS--SSGGVTSALS 217
           +H  Y ++ YS   TS  GH+N QL GS  SSG   SALS
Sbjct: 177 EHALYNNIMYSGLTTSRAGHTNGQLAGSAFSSGLPFSALS 216


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -3

Query: 299 APHKPLSEVIATNNCWGHLREV*PQPFHRTVLHLHH 192
           A H PL+   AT+N +   R + P   HRT LHLHH
Sbjct: 682 AQHLPLTPPRATSNSYATARHIYPIR-HRT-LHLHH 715


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 139 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 44
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 442 EIGRLPPTFLDASQLATAILTSDTSLVPERSFTTSSSLWSRTPS--PTCPSTLRSLLRAP 615
           +I R PP     S   +A  TS TS     S TTS    S T S   T  +   ++L A 
Sbjct: 126 QISRPPPRPASTSLTTSAAFTSSTSSAASTSLTTSPVSTSSTSSAASTSLTPAPNILSAA 185

Query: 616 QADC 627
             +C
Sbjct: 186 ATEC 189


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 444 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 265
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 264 KQ 259
            Q
Sbjct: 121 SQ 122


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 538 TTSSSLWSRTPSPTCPSTLRSLLRAPQADCVR 633
           T +S+ + RTP P CP  +   L  P+   +R
Sbjct: 260 TNTSASYCRTPEPRCPPLVNFSLDLPECFAIR 291


>SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)
          Length = 607

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 397 ILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSDTSLVPERSFTTSSSLWSR 564
           I+   +G+H   +AN++       +   Q+ + I+  DT   P+   T     WS+
Sbjct: 308 IISNTHGRHTYCIANDLFGPGSPDITGKQVRSRIVGYDTQEAPKPQDTVPQIFWSK 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,062,495
Number of Sequences: 59808
Number of extensions: 545894
Number of successful extensions: 1552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)