Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0637
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 49 3e-06
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 46 3e-05
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 43 2e-04
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro... 30 1.3
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 30 1.7
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 2.3
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 2.3
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 29 4.0
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 6.9
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 6.9
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 6.9
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 6.9
At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ... 27 9.2
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +2
Query: 62 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 211
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVE 100
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 265 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRG-ILQRLY 414
V +T DRGLCG + + K R+ E ++ VI VG K L+R Y
Sbjct: 130 VVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPY 182
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 253 QQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQRLYGKHI 426
+ + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+ R I
Sbjct: 104 KSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDI 163
Query: 427 ISVANEIGRLPPTFLDASQLATAIL 501
+ E+ + P + S LA IL
Sbjct: 164 VLSVTELNKNPLNYAQVSVLADDIL 188
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/33 (57%), Positives = 29/33 (87%)
Frame = +2
Query: 53 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAK 151
R+++T + + R+KSVKNIQKIT++MKMV+A+K
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +2
Query: 62 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 211
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVE 110
Score = 31.5 bits (68), Expect = 0.56
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 265 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQRLYGKHIISVA 438
V +T D+GLCG + V+K R+ E I VI VG K R + +
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR-RDEFDVDKC 198
Query: 439 NEIGRLPPTFLDASQLATAILT 504
E G + PT +A +A + +
Sbjct: 199 IEGGGVFPTTKEAQVIADDVFS 220
>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family
protein similar to carbamoylphosphate synthetase
GI:6552726 from [Medicago sativa]; contains Pfam
profiles PF02786: Carbamoyl-phosphate synthase L chain
ATP binding domain, PF00289: Carbamoyl-phosphate
synthase L chain N-terminal domain, PF02787:
Carbamoyl-phosphate synthetase large chain
oligomerisation domain
Length = 1187
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -3
Query: 596 LSVEGQVGLGVRDHRLELVVNDLSGTKLVSEV--RIAVAS*LASKKVGGRRPISLATLMM 423
+++ ++G+ ++ VN + G ++ E+ R++ +S LASK G PI+ +
Sbjct: 361 IAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGF--PIAKMAAKL 418
Query: 422 CFPYNLCRIPRDLS 381
Y L +IP D++
Sbjct: 419 SVGYTLDQIPNDIT 432
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = -3
Query: 665 CRIGARRCPESRTQSACGALNRLLSVEGQVGLGVRDHRLE-LVVNDLSGTKLVSEVRIAV 489
C + R CP++ A G L R V GQV + R +E G + + ++
Sbjct: 635 CLLSGRFCPDASLSGAAGTLRRPAEVLGQVHVATRMKPVESFWALAYGGPMSLLPLTVSS 694
Query: 488 AS*LASKKVGGRRPISLATLMMCFP 414
+ + G P+SL+T+ + P
Sbjct: 695 VHKDSLEPCLGNLPLSLSTVTLAAP 719
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -3
Query: 440 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTAPHKPLSEVIATN 261
L ++ PY +C++P SPT ++M+ S L + P C+ P S +
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS----PFSSRLHGT 563
Query: 260 NCWGHLREV 234
N W L+ V
Sbjct: 564 N-WAILKSV 571
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -3
Query: 440 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTAPHKPLSEVIATN 261
L ++ PY +C++P SPT ++M+ S L + P C+ P S +
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS----PFSSRLHGT 566
Query: 260 NCWGHLREV 234
N W L+ V
Sbjct: 567 N-WAILKSV 574
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = -2
Query: 456 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 277
E S ++ N+ D + + TARF++H H+D+ RF T H Y S
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQYKLTNRSGDHISS 382
Query: 276 GHSNKQLLGSSSGGVTSALS 217
++L S G+ L+
Sbjct: 383 ESDGTKILWSYPEGLRKLLN 402
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 387 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 250
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 456 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 343
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 359 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCWGH 246
F APGSL +T P+C++ + + + NN G+
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGY 184
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 359 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCWGH 246
F APGSL +T P+C++ + + + NN G+
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGY 189
>At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing
protein PBF protein, Triticum aestivum, EMBL:AJ012284
Length = 210
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 450 SDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTS 307
S+++S N ++ QS + T D S+ V +HFGY S
Sbjct: 87 SEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,436
Number of Sequences: 28952
Number of extensions: 361452
Number of successful extensions: 1033
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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