Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0634
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    33   0.028
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   1.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   2.5  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   2.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   3.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   3.3  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   4.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.5  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   7.5  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   7.5  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   7.5  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   9.9  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 32.7 bits (71), Expect = 0.028
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 317 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPEIDVPEPVELP 457
           I+ N P+  A+ P+  E + EEPLP    LP    PE  +P    LP
Sbjct: 80  ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLP 126



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 353 PVDVEDIAEEPLPEVVILPTPVFPEIDVPEPVELPS 460
           P+  E + EEPLP    LP    PE  +P    LP+
Sbjct: 108 PLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPN 143


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 424 RKYG-SGENNNFGQRLFGNVLN--INGISCNLGRTVHVDDDLDEGSA 293
           R+YG  G N +    L   ++N  + G   +L RTV+V+ D+DE  A
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEA 506


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = -1

Query: 311 SGRGECHQRR*QSQGHLQQGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSR 132
           SG  +  QRR + +  +Q+  S+R   +  N +  + + ++  N    N      V    
Sbjct: 93  SGEDKSSQRRTRLK-QIQEFISHRRSFLNSNANSVESEKILAENNHMFN------VKSKL 145

Query: 131 SNRDGFVGVNKSRSNGD 81
           SN++ F+   + R+NG+
Sbjct: 146 SNKESFIKTRRPRTNGE 162


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 290 DGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPEIDVP 439
           DG P  +     + P+E    P +   IA  P+P ++    P  P   +P
Sbjct: 524 DGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTPAPPLP 573


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 323 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 418
           ++ P++ A+  V  E   E+P+P  V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -3

Query: 255 RQVQQRWARRCQQEQVRRRWARRCQQEQVQQRWA 154
           +Q QQ+  ++ QQ+Q +++  ++ QQ+Q QQ+ A
Sbjct: 259 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQA 292



 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = -3

Query: 261 STRQVQQRWARRCQQEQVRRRWARRCQQEQVQQR 160
           S + +QQ+  ++ QQ+Q +++  ++ QQ+Q QQ+
Sbjct: 252 SLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 285



 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -3

Query: 255 RQVQQRWARRCQQEQVRRRWARRCQQEQVQQR 160
           +Q QQ+  ++ QQ+Q +++  ++ QQ+Q QQ+
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 288



 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -3

Query: 255 RQVQQRWARRCQQEQVRRRWARRCQQEQVQQR 160
           +Q QQ+  ++ QQ+Q +++  ++ QQ+Q QQ+
Sbjct: 258 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 289


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 330 RFTLMMIWTRGVPSAPVTVTGAPSTRQVQQR 238
           RF   +   R  PS+PV+  G+P    V+ R
Sbjct: 10  RFERRLTGPRAAPSSPVSTNGSPLNNLVRSR 40


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 335 SEIAADPV----DVEDIAEEPLPEVVILPTPVFPEIDVPEPVELP 457
           SEI++ P     DV D  EE    ++  P P  P + VP P   P
Sbjct: 704 SEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAP 748



 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 383 PLPEVVILPTPVFPEIDVPEPVEL 454
           P P  VI+PTP    I VP P  +
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPI 757


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -3

Query: 324 TLMMIWTRGVPSAPVTVTGAPSTRQVQQRWARRCQQEQVRRRWAR 190
           T + IW      +   + G       Q+R  R   Q ++R +WA+
Sbjct: 560 TCLKIWKEACKLSKTVLDGQQPLPNPQKRQKRLSNQVELRNQWAK 604


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 335  SEIAADPVDVEDIAEE 382
            + +AAD +D+EDI+EE
Sbjct: 1084 ASLAADNMDIEDISEE 1099


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 351 IPLMLRTLPKSLCPKLLFSPLPYFLKSTFLNPWSSPAL 464
           + L L +      PKL + P+P F+ ST   P S P L
Sbjct: 172 VALYLLSFTPRTPPKLGYLPVPSFIYSTGELPLSYPTL 209


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 233 AHLCWTCLVEGAPV 274
           A + WTCLV GAP+
Sbjct: 494 AEMNWTCLVFGAPM 507


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 290 DGTPLVQIIINVNRPSEIAADPVDVEDIAEE 382
           D   L+Q++ N N PS  AA  V  +   E+
Sbjct: 383 DSAQLIQLVENRNNPSVAAASNVAADQSTED 413


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 141 VDTYVPISVGPALVDTYEPI 200
           VDT++PI +GP  V T+  I
Sbjct: 243 VDTHLPIKMGPLDVQTHPNI 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,253
Number of Sequences: 5004
Number of extensions: 32967
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)