Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0634
(464 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37010.1 68418.m04438 expressed protein 31 0.38
At1g30780.1 68414.m03763 F-box family protein 30 0.89
At2g35990.1 68415.m04417 hypothetical protein contains Pfam prof... 29 1.5
At5g27910.1 68418.m03352 CCAAT-box binding transcription factor ... 28 3.6
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote... 27 4.7
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote... 27 4.7
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote... 27 4.7
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote... 27 4.7
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote... 27 4.7
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 27 4.7
At1g06420.1 68414.m00679 expressed protein ; expression supporte... 27 4.7
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 27 6.2
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 27 6.2
At1g49250.1 68414.m05522 ATP dependent DNA ligase family protein... 27 6.2
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 27 6.2
At1g02570.1 68414.m00208 expressed protein 27 6.2
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 27 8.3
At1g47940.1 68414.m05339 hypothetical protein 27 8.3
>At5g37010.1 68418.m04438 expressed protein
Length = 637
Score = 31.1 bits (67), Expect = 0.38
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Frame = -1
Query: 455 GAPRVQERRFQEIREWGE*QLRAKALRQCPQHQRDQLQSRKDGSR-***SGRGECHQRR* 279
G ERR R+ G R + R+ P +RD +S + GSR SG G +R
Sbjct: 157 GEDEEAERRIHRQRQRGGESPRERR-RRTPSRERDDSKSNRSGSRERGSSGNGGGSRRVS 215
Query: 278 QSQGHLQQGRSNRDGLVGVNKSRSDGDG----LVGVNKSRSNRDGHVGVNKSRSNRD 120
+S G + N G VN S ++ G + +K+ SN +G V + R+
Sbjct: 216 RSPGRRSEINPNSSG-NSVNSSNNNRPGKFVSVPATDKALSNNNGDGSVKRITVKRN 271
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 29.9 bits (64), Expect = 0.89
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 353 PVDVEDIAEEPLPEVVILPTPVFPEIDVP 439
P D+ +A PLP+V +LP P FP+ + P
Sbjct: 75 PPDLPLLAP-PLPDVPLLPPPAFPDFEKP 102
>At2g35990.1 68415.m04417 hypothetical protein contains Pfam profile
PF03641: decarboxylase family protein
Length = 231
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 360 MLRTLPKSLCPKLLFSPLPYFLKST 434
+L +PKSL P+ +F+ LPY L S+
Sbjct: 67 VLGIIPKSLAPREVFTNLPYILTSS 91
>At5g27910.1 68418.m03352 CCAAT-box binding transcription factor
Hap5a, putative
Length = 187
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 317 INVNRPS-EIAADPVDVEDIAEEPLPEVVILPTPVFPEIDVPEP 445
I V R S AADPV + I + LP +++ TPV + + +P
Sbjct: 113 IEVKRESVAAAADPVAMPPIDDGELPPGMVIGTPVCCSLGIHQP 156
>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 27.5 bits (58), Expect = 4.7
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 340 LGRTVHVDDD-LDEGSAISAGDSHRGTFNKAGPTEMGS*VSTRAGPTEMGS*VSTRAGPT 164
+ VHV + +D S +S G + A P + S V+ + + +GS + R GPT
Sbjct: 89 VAENVHVQSEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNRSVLGSFGALRIGPT 148
Query: 163 EMGT*VSTRAGPTEMGS*VSTRAGPT 86
AGP + VS+R+ PT
Sbjct: 149 RRA------AGPRSL---VSSRSSPT 165
>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 388
Score = 27.5 bits (58), Expect = 4.7
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 340 LGRTVHVDDD-LDEGSAISAGDSHRGTFNKAGPTEMGS*VSTRAGPTEMGS*VSTRAGPT 164
+ VHV + +D S +S G + A P + S V+ + + +GS + R GPT
Sbjct: 89 VAENVHVQSEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNRSVLGSFGALRIGPT 148
Query: 163 EMGT*VSTRAGPTEMGS*VSTRAGPT 86
AGP + VS+R+ PT
Sbjct: 149 RRA------AGPRSL---VSSRSSPT 165
>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 506
Score = 27.5 bits (58), Expect = 4.7
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 340 LGRTVHVDDD-LDEGSAISAGDSHRGTFNKAGPTEMGS*VSTRAGPTEMGS*VSTRAGPT 164
+ VHV + +D S +S G + A P + S V+ + + +GS + R GPT
Sbjct: 89 VAENVHVQSEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNRSVLGSFGALRIGPT 148
Query: 163 EMGT*VSTRAGPTEMGS*VSTRAGPT 86
AGP + VS+R+ PT
Sbjct: 149 RRA------AGPRSL---VSSRSSPT 165
>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 27.5 bits (58), Expect = 4.7
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 340 LGRTVHVDDD-LDEGSAISAGDSHRGTFNKAGPTEMGS*VSTRAGPTEMGS*VSTRAGPT 164
+ VHV + +D S +S G + A P + S V+ + + +GS + R GPT
Sbjct: 89 VAENVHVQSEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNRSVLGSFGALRIGPT 148
Query: 163 EMGT*VSTRAGPTEMGS*VSTRAGPT 86
AGP + VS+R+ PT
Sbjct: 149 RRA------AGPRSL---VSSRSSPT 165
>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 505
Score = 27.5 bits (58), Expect = 4.7
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 340 LGRTVHVDDD-LDEGSAISAGDSHRGTFNKAGPTEMGS*VSTRAGPTEMGS*VSTRAGPT 164
+ VHV + +D S +S G + A P + S V+ + + +GS + R GPT
Sbjct: 89 VAENVHVQSEGIDCDSPVSGGSNSDSPPVPAPPPKPSSTVNPGSNRSVLGSFGALRIGPT 148
Query: 163 EMGT*VSTRAGPTEMGS*VSTRAGPT 86
AGP + VS+R+ PT
Sbjct: 149 RRA------AGPRSL---VSSRSSPT 165
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 329 RPSEIAADPVDVEDIAE--EPLPEVVILPTPVFPEIDVPEPVELP 457
+P+ P IA EPLP +V P+P P P PV P
Sbjct: 245 KPTRDIEFPAPAPSIAPIVEPLPAIVPSPSPSSPPPPPPPPVAAP 289
>At1g06420.1 68414.m00679 expressed protein ; expression supported
by MPSS
Length = 221
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 261 STRQVQQRWARRCQQEQVRRRWARRCQQEQVQQR 160
S Q+Q+RW + +++Q + + R ++QV QR
Sbjct: 26 SILQLQERWLKEKEKKQKEKDFVERGVKQQVDQR 59
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 377 EEPLPEVVILPTPVFPEIDVPEPVELP 457
E LP++ L P FPEI PE ++P
Sbjct: 100 ETKLPDIPKLELPKFPEIPKPELPKMP 126
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +2
Query: 179 C*HLRAHLRRTCSC*HLRA----HLCWTCL 256
C ++ + +T C HL+ H+CWTCL
Sbjct: 1719 CPICKSTIEKTDGCNHLQCRCGKHICWTCL 1748
>At1g49250.1 68414.m05522 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 657
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 363 LRTLPKSLCPKLLFSPLPYFLKSTFLNP--WSSP 458
L+ L SLC K++ +P Y+ LNP W P
Sbjct: 548 LQDLSSSLCSKVIATPKQYYQVDNDLNPDVWLEP 581
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -3
Query: 291 SAPVTVTGAPSTRQVQQRWARRCQQEQVRRRWARRCQQEQVQQR 160
+ P + PS +Q + ++ QQ+Q +++ ++ QQ+Q QQ+
Sbjct: 570 TGPSSALPGPSPQQASDQLRQQQQQQQQQQQQQQQQQQQQQQQQ 613
>At1g02570.1 68414.m00208 expressed protein
Length = 431
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 212 CSC*HLRAHLCWTCLVEGAPVTVTGADGTPLVQIIINVNRPSEIAA 349
CS H ++CW L G +GT I I+ ++ +AA
Sbjct: 90 CSVLHSHLYICWIVLFIVQACVAFGIEGTMSTTISIDTDKSFSLAA 135
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +2
Query: 179 C*HLRAHLRRTCSC*HLRA----HLCWTCL 256
C ++ + +T C H++ H+CWTCL
Sbjct: 1722 CPICKSTIEKTDGCNHMKCRCGKHICWTCL 1751
>At1g47940.1 68414.m05339 hypothetical protein
Length = 280
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 383 PLPEVVILPTPVFPEIDVPEPVELP 457
P P+VV+ P+ E D+P P+ +P
Sbjct: 39 PEPKVVVTPSNKNNENDIPSPLNIP 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,835,806
Number of Sequences: 28952
Number of extensions: 192822
Number of successful extensions: 727
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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