Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0633
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    31   0.087
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   10.0 

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 31.5 bits (68), Expect = 0.087
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 341  DNGALFSLFDDNNGLGLDFSGSNRNTSGDLTFTMS 237
            + G  FS+  +   L    SGS+RN+SGD T +MS
Sbjct: 1023 ETGRRFSILREAGSLRESMSGSSRNSSGDYTDSMS 1057


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 255 LDVHDELHKRRGTGGNSRSNDNR 187
           +D  D + K RG GG   SND R
Sbjct: 394 IDEIDAIGKARGRGGQFGSNDER 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,455
Number of Sequences: 5004
Number of extensions: 14274
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)