Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0633
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   30   1.1  
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              29   2.6  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 29   3.4  
SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     27   7.9  

>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 386 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGL---DFSGSNRNTSG 258
           DN  GV G+ DD   DNG     +DD+NG+G+   D  G N N +G
Sbjct: 124 DNGVGV-GNYDD---DNGVGVGNYDDDNGVGVGNYDGDGGNNNGNG 165


>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 386 DNRGGVDGSNDDGLRDNGALFSLFD----DNNGLGLDFSG-SNRNTSGD 255
           D+ GG DGS+DD + DNG+   + D    DN+G G D  G  N +  GD
Sbjct: 259 DDDGGDDGSDDD-VGDNGSDDGIDDVDSGDNDGDGSDGGGDDNGDDDGD 306


>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 386 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRN 267
           DN  G   SND+G  +NG+     DDNNG G    G++ N
Sbjct: 125 DNNNGAC-SNDNGNDNNGSYHYGNDDNNGAGSYEDGNDDN 163



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 386 DNRGGVDGSNDDGLRDNGA--LFSLFDDNNGLGLDFSGSNRNTSG 258
           DN G   GSND+   +NGA       DDNNG G + +  + N +G
Sbjct: 17  DNNG--TGSNDNNDDNNGASSYDDNDDDNNGAGSNDNNDDNNGAG 59


>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -2

Query: 386 DNRGGVDGSNDDGLRDNGAL--FSLFDDNNGL-GLDFSGSNRNTSG 258
           DN  GV   +DDG    G+       D+NNG+   D+ GS  N  G
Sbjct: 148 DNNNGVSSDDDDGSGSGGSSDDGGSGDNNNGVSSSDYGGSGDNDDG 193


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 386 DNRGGVDGSNDDGLRDNGALFSLFDDNNGL-GLDFSGSNRNTSGD 255
           DNRG     +    RD G  +   +D N   G ++ G+NRN + D
Sbjct: 63  DNRGNRASQDSGNRRDRGQTYHSREDRNDYRGDNYRGNNRNDNRD 107


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 359 NDDGLRDNGALFSLFDDNNG 300
           NDDG  D G++F   DD+NG
Sbjct: 894 NDDGGLDGGSVFDAVDDDNG 913


>SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 258 GLDVHDELHKRR--GTGGNSRSNDNRSGLHGSS 166
           G+ V  + HK++  G GG+ R  +  SG +GS+
Sbjct: 20  GIPVLSQCHKKKKSGDGGSERGRERESGAYGSN 52


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 383  NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGD 255
            N  GVDG +DD   D+G+     DD +G G+   GS      D
Sbjct: 1071 NGSGVDGDDDDVDGDDGSGSVDGDDGSGGGVGDDGSGVGDDDD 1113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,363,098
Number of Sequences: 59808
Number of extensions: 129757
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)