Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0632
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 125 7e-30
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 125 7e-30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 97 3e-21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 75 1e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.041
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 3.6
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.6
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 8.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 8.2
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 125 bits (301), Expect = 7e-30
Identities = 57/84 (67%), Positives = 66/84 (78%)
Frame = +1
Query: 256 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 435
DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF
Sbjct: 696 DAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVF 755
Query: 436 EESQVAGTPMFIVKAYLPVNESFG 507
E Q GTP++ +KAYLPVNESFG
Sbjct: 756 SEEQRVGTPLYNIKAYLPVNESFG 779
Score = 124 bits (299), Expect = 1e-29
Identities = 55/84 (65%), Positives = 66/84 (78%)
Frame = +2
Query: 2 DFKTRARYLTEKYEYDVTEARKIWCFGPEGTAPNILVDCSKGVQYLNEIKDSVVAGFQWA 181
DFK RAR + +++ +DVT+ARKIWCFGP+ T N++VD +K V YLNEIKDSVVA F WA
Sbjct: 611 DFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWA 670
Query: 182 AKEGVMAEENLRGVRFNIYDVTLH 253
+KEG M EENLR RFNI DV LH
Sbjct: 671 SKEGPMFEENLRSCRFNILDVVLH 694
Score = 91.5 bits (217), Expect = 1e-19
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYL 686
FT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +PD T+Y
Sbjct: 780 FTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYY 839
Query: 687 DKL 695
D+L
Sbjct: 840 DRL 842
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 125 bits (301), Expect = 7e-30
Identities = 57/84 (67%), Positives = 66/84 (78%)
Frame = +1
Query: 256 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 435
DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF
Sbjct: 696 DAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVF 755
Query: 436 EESQVAGTPMFIVKAYLPVNESFG 507
E Q GTP++ +KAYLPVNESFG
Sbjct: 756 SEEQRVGTPLYNIKAYLPVNESFG 779
Score = 124 bits (299), Expect = 1e-29
Identities = 55/84 (65%), Positives = 66/84 (78%)
Frame = +2
Query: 2 DFKTRARYLTEKYEYDVTEARKIWCFGPEGTAPNILVDCSKGVQYLNEIKDSVVAGFQWA 181
DFK RAR + +++ +DVT+ARKIWCFGP+ T N++VD +K V YLNEIKDSVVA F WA
Sbjct: 611 DFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWA 670
Query: 182 AKEGVMAEENLRGVRFNIYDVTLH 253
+KEG M EENLR RFNI DV LH
Sbjct: 671 SKEGPMFEENLRSCRFNILDVVLH 694
Score = 91.5 bits (217), Expect = 1e-19
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYL 686
FT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +PD T+Y
Sbjct: 780 FTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYY 839
Query: 687 DKL 695
D+L
Sbjct: 840 DRL 842
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Frame = +1
Query: 256 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 435
+ I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV
Sbjct: 812 EQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVL 871
Query: 436 EESQVAGTPMFIVKAYLPVNESFG 507
++ G+P+++V+A +PV +S G
Sbjct: 872 QDIPRPGSPLYLVRALIPVIDSCG 895
Score = 65.7 bits (153), Expect = 6e-12
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +2
Query: 8 KTRARYLTEKYEYDVTEARKIWCFGPEGTAPNILVDCSKGVQY----LNEIKDSVVAGFQ 175
K + + + Y++D+ +R IW FGP+ NIL D + LN +K+ + GFQ
Sbjct: 725 KRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQ 784
Query: 176 WAAKEGVMAEENLRGVRFNIYDVTL 250
W +EG + +E +R V F + DV L
Sbjct: 785 WGTREGPLCDETIRNVNFRLMDVVL 809
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP------------YNVVQETRKRKG 650
F DLR +T GQA Q VFDHWQV+PGDP + KP + + +TR+RKG
Sbjct: 896 FETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKG 955
Query: 651 LKEGLPDLTQYLDK 692
L E + T+Y D+
Sbjct: 956 LVEDV-STTRYFDQ 968
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +1
Query: 277 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 456
GQ+I + + L PRLM +Y C++Q +G +YGV+++RRG V +E G
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900
Query: 457 TPMFIVKAYLPVNESFG 507
TP FIVKA +PV ESFG
Sbjct: 901 TPFFIVKALIPVVESFG 917
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Frame = +2
Query: 5 FKTRARYLTEKYEYDVTEARK----IWCFGPEGTAPNILVDCSKGVQYL----------- 139
F R L E+ D+ E + I FGP+ PNIL D +K ++
Sbjct: 726 FYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIP 785
Query: 140 NEIKDSVVAGFQWAAKEGVMAEENLRGVRFNI 235
+++ + VV FQ +G + E ++G+ +I
Sbjct: 786 SDLSEYVVTAFQLITHQGPLCAEPVQGICVSI 817
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.041
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 322 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 501
L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 502 F 504
F
Sbjct: 726 F 726
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 134 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHMMPSIEVVAKSFQQLEDA 307
YLN + + FQ+ EGV+ L V NI+ L P+ V A + Q +E +
Sbjct: 6 YLNHVIRGIYNDFQFLVDEGVVERSALDWVHANIH---LQDGPASPVTAPAAQPVESS 60
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 88 LGAKAPNLTGFGNIIFVLFCKIPSAS 11
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 567 HWQVLPGDPCEPQSKPYNVVQETRKRK 647
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 286 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 462
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 463 MFIVKAY 483
+K+Y
Sbjct: 445 ALALKSY 451
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 134 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 226
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,324
Number of Sequences: 5004
Number of extensions: 75105
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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