Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0632
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 151 4e-37
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 71 9e-13
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 54 9e-08
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18) 28 6.6
SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 28 6.6
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 6.6
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_1533| Best HMM Match : RVT_1 (HMM E-Value=0.0074) 28 6.6
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 28 8.8
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 151 bits (367), Expect = 4e-37
Identities = 71/84 (84%), Positives = 74/84 (88%)
Frame = +1
Query: 256 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 435
DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGVLNRRRG V
Sbjct: 687 DAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVL 746
Query: 436 EESQVAGTPMFIVKAYLPVNESFG 507
EES VAGTPMFIVKAYLPV ESFG
Sbjct: 747 EESNVAGTPMFIVKAYLPVMESFG 770
Score = 148 bits (359), Expect = 4e-36
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +2
Query: 2 DFKTRARYLTEKYEYDVTEARKIWCFGPEGTAPNILVDCSKGVQYLNEIKDSVVAGFQWA 181
DFK RARYL + Y +DV EARKIW FGPEGT PN+LVD SKGVQYLNEIKDSVVAGFQWA
Sbjct: 602 DFKIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWA 661
Query: 182 AKEGVMAEENLRGVRFNIYDVTLH 253
KEG + +EN+RGVRFNI+DVTLH
Sbjct: 662 TKEGPLCDENVRGVRFNIHDVTLH 685
Score = 103 bits (248), Expect = 1e-22
Identities = 48/63 (76%), Positives = 50/63 (79%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYL 686
FTADLRS TGGQAFPQCVFDHWQVLPGD + S P VV TRKRKGLKEG+P L YL
Sbjct: 771 FTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKGLKEGIPALDNYL 830
Query: 687 DKL 695
DKL
Sbjct: 831 DKL 833
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 103 bits (246), Expect = 2e-22
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +1
Query: 256 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 435
+ IHRGGGQIIPT RR Y+ L A PRLMEP + E+Q P V +Y VL RRRGHV
Sbjct: 667 EPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVT 726
Query: 436 EESQVAGTPMFIVKAYLPVNESFG 507
+++ V G+P++ +KA++P +SFG
Sbjct: 727 QDAPVPGSPLYTIKAFIPAIDSFG 750
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Frame = +2
Query: 8 KTRARYLTEKYEYDVTEARKIWCFGPEGTAPNILVDCSKGVQY----LNEIKDSVVAGFQ 175
K + KY++D+ AR IW FGPE T PNILVD + + LN +KDS++ GFQ
Sbjct: 580 KKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQ 639
Query: 176 WAAKEGVMAEENLRGVRFNIYDVTL 250
WA +EG + +E +R V+F I D +
Sbjct: 640 WATREGPLCDEPIRNVKFKILDAVI 664
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 599
F DLR++T GQAF VF HWQ++PGDP +
Sbjct: 751 FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 70.9 bits (166), Expect = 9e-13
Identities = 29/60 (48%), Positives = 42/60 (70%)
Frame = +1
Query: 328 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 507
A PRLMEP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFG
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 599
F DLR++T GQAF VF HWQ++PGDP +
Sbjct: 61 FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 54.4 bits (125), Expect = 9e-08
Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 331 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 507
QP RLM +Y C IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Score = 36.3 bits (80), Expect = 0.025
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Frame = +2
Query: 59 ARKIWCFGPEGTAPNILVDCSKGV------QYLNE-----------IKDSVVAGFQWAAK 187
A IW FGP GT PNIL++ Q L+E S+V+GFQ
Sbjct: 179 ADHIWAFGPRGTGPNILLNRDPDYPRPSIWQCLDENAGYKAGEYKPYDSSIVSGFQMTTL 238
Query: 188 EGVMAEENLRGVRFNIYDVTLH 253
G + E L GV F+I + L+
Sbjct: 239 SGPLCAEPLMGVCFSIEHLVLN 260
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 507 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 593
F+ ++R T G A PQ +F HW+ + DP
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWEAIDLDP 495
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 34.3 bits (75), Expect = 0.10
Identities = 22/53 (41%), Positives = 27/53 (50%)
Frame = +1
Query: 508 LLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 666
L P+ VPTPA R S + RS +TRAN+R SP +RG K S
Sbjct: 164 LSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 262 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 360
+ R +I+PT RR + LLT+ +PVY+
Sbjct: 538 VRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 523 VPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVSQ 669
+PT ++ SRS+ G S TR R + R R+RGK+ +S+
Sbjct: 440 LPTEKEKTSRSSSELSGDSQGSTRPRCRPAEPEGTRDRKRGKESESLSK 488
>SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)
Length = 536
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 542 LSAGVGTQIGSKPNDSLTGR*AFTMNIGVPATW 444
++AGVG Q G+K S TGR T N+G + W
Sbjct: 458 ITAGVGIQPGNKLEVSQTGREKCT-NVGTSSPW 489
>SB_45545| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 729
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 500 RSVYCRFAFQHRRTGLPAVRIRPLAGPPWRPVRTSEQALQRCTGNEKEERIEGRSPRLNS 679
R++ R + GLP ++ P RP + + R G E R+E PRL S
Sbjct: 623 RALRAREELSRMKVGLPP-HVQGFGTPKDRPDGPPREGVARPKGEEDVIRLEQTQPRLRS 681
Query: 680 I 682
I
Sbjct: 682 I 682
>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 828
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 493 NESFGLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLY 627
N S G+L PTP SR A S G SS ++ +SPT +Y
Sbjct: 76 NLSVGMLKNPSPTPVT--SRPASSRSGYSSKSGTKSIHSSPTAMY 118
>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1358
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -2
Query: 457 YLPPGTLRKRDHDVCSVHRRYHPQLLQDTEFHKDIQAP*DGAEQLADMRTSIF*LLE*FG 278
Y+ TL+K + QLL +T + D+Q D EQL + ++E G
Sbjct: 472 YILGATLQKHVASYSDKYPETVYQLLTNT-YVDDVQTGGDDPEQLLRFKQEASEIMESGG 530
Query: 277 HHLYGWHHMECYIIDVESNTT 215
L+ WH +++VE +T+
Sbjct: 531 FQLHKWH---SNVLEVEESTS 548
>SB_1533| Best HMM Match : RVT_1 (HMM E-Value=0.0074)
Length = 503
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = -2
Query: 457 YLPPGTLRKRDHDVCSVHRRYHPQLLQDTEFHKDIQAP*DGAEQLADMRTSIF*LLE*FG 278
Y+ TL+K + QLL +T + D+Q D EQL + ++E G
Sbjct: 352 YILGATLQKHVASYSDKYPETVYQLLTNT-YVDDVQTGGDDPEQLLRFKQEASEIMESGG 410
Query: 277 HHLYGWHHMECYIIDVESNTT 215
L+ WH +++VE +T+
Sbjct: 411 FQLHKWH---SNVLEVEESTS 428
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 576 VLPGDPCEPQS-KPYNVVQETRK 641
+LP PCEP S KPY E R+
Sbjct: 65 ILPASPCEPDSPKPYTPESEGRE 87
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 329 AVSRHAYKHLLVVGMIWPPPLWMA 258
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,611,728
Number of Sequences: 59808
Number of extensions: 604913
Number of successful extensions: 1635
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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