Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0631
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    31   0.14 
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    28   1.7  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    27   2.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.9  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    27   3.9  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   8.9  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   8.9  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 490 CRSWRKGSKS*AVWECTESLVLRLATRSTER 398
           C+ +R+ SK   +W C E L+  L   S+ER
Sbjct: 851 CKEFRQASKQMEIWRCPEILIFHLKRFSSER 881


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 243 VGQICEGSLKKRGHCLLVSGSDAR 314
           +G +C   LK R  CL+V+G+  +
Sbjct: 254 IGSVCSQDLKSRPDCLIVAGTSCK 277


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 303 TRSQANNAHAFLMILHRSDRPHIVNKYSFPV 211
           TRSQ  + HAF+M +HR+    + ++Y F +
Sbjct: 147 TRSQRIHFHAFMMQVHRTSH-DLQDRYGFEI 176


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 599 LPADELAPTAPEEASTLQNDGP 664
           +P D++ PT+P EAS + N  P
Sbjct: 145 IPLDDIEPTSPREASPVFNGRP 166


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 279 GHCLLVSGSDARALTAPDVINCKLSVRCSPPNQIAEQTQPRSVLRVANRSTRD 437
           GH + +S   A+    PD +   L+   S P ++   + P+  + V + ST D
Sbjct: 246 GHLMCISVKFAKTSPTPDQVREVLANYVSEPQKLGCYSAPKQAIYVFDDSTPD 298


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 213 PGSYIY*QCVVGQICEGSLKKRGHCLLVSGSDARALTAPDVIN--CKLSVRCSPPNQIAE 386
           PG Y+    V  Q C G + +   CL+V+  +A+   + + I+  C  S+      ++ E
Sbjct: 505 PGIYVL-SSVSSQYCSGEVLEPNTCLVVTPPEAKVSVSFEEISDQCAGSIGARADLEL-E 562

Query: 387 QTQPRSVLRVANRSTRDS 440
            T P     +A R T+D+
Sbjct: 563 GTPP---FTIAYRMTKDN 577


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 249 QICEGSLKKRGHCLLVSGSDA 311
           ++CE   KKRG+ L   G+D+
Sbjct: 321 KVCEEEFKKRGYKLAADGTDS 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,476
Number of Sequences: 5004
Number of extensions: 65360
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)