Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0631
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              30   1.8  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 412

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 185 LKPFATQGDAAIVNQAYKI--LSENISMVKKNMPMFEILIAVTNFPRVV 45
           + P A  G+  +V   +K+  +    +M+  NM +F+I++AVT  P ++
Sbjct: 46  IMPIALIGNVFVVRTIFKVPRMKTPTNMMFVNMALFDIIVAVTMMPYMI 94


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 294  VSGSDARALTAPDVINCKLSVRCSPPNQIAEQTQPRSVLRVANRSTRDSVHSHT 455
            +SG   R+ TAP V+N  LS   +P +   + T   S   + N ST  +V SHT
Sbjct: 2148 LSGDSPRSTTAPSVVNSSLSPSSTPSSTPLKGT---SSSPLQNMST-SNVDSHT 2197


>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 822

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 540 ASRPSVAKAREVSRR-RSVGLGGKAPNHERCGNAQSL*CCDWPPVA 406
           +S   V KA++  +  R VG      N + CG    L CCD  P A
Sbjct: 25  SSEIPVKKAKKTDKEARKVGRSVNHDNCDSCGEGGDLLCCDQCPCA 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,200,988
Number of Sequences: 59808
Number of extensions: 548801
Number of successful extensions: 1409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)