Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0631
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05480.1 68418.m00590 expressed protein                             31   1.1  
At4g10890.1 68417.m01772 expressed protein                             30   1.5  
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At5g01280.1 68418.m00037 expressed protein                             28   7.8  
At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive de...    28   7.8  

>At5g05480.1 68418.m00590 expressed protein
          Length = 608

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 533 RDANALVRSTADPQPRPQIRSNLPADELAPT 625
           R A+  +RS  +PQ   ++R  LP+D+L P+
Sbjct: 34  RSASTCLRSPVEPQEYEELRRPLPSDQLTPS 64


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 246 GQICEGSLKKRG--HCLLVSGSDARALTAPDVINCKLSVRCSPPNQIAEQTQPRSVLRVA 419
           G +  GS+ K    H L+ S    R++    + NCKLS    PP  + +  Q  S+L+  
Sbjct: 398 GTVSLGSVDKESNNHPLINSPCTGRSVVDSRLENCKLSKDVPPPKPLRDVNQILSILQKR 457

Query: 420 N 422
           N
Sbjct: 458 N 458


>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 850

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 326 ARCHKLQVVRAMFTAQSDRGADTASLRA-TGGQSQH 430
           A+C K+   RAMF + S +  D  +     GG SQH
Sbjct: 418 AKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQH 453


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2

Query: 532 TERSKSTRSLTTSFCRSWRKGSKS*AVWECTESLVLRLATRST 404
           T R+  T S TTS  RSW + S S        +L    ATR T
Sbjct: 122 TTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPT 164


>At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive
           dehalogenase-related contains similarity to
           tetrachloro-p-hydroquinone reductive dehalogenase
           GI:148689 from [Flavobacterium sp.]
          Length = 266

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 150 RQPSIQNII*KYFNG*EKYA 91
           R+PS + +I +YFNG  KYA
Sbjct: 229 RRPSYKKVIGRYFNGWRKYA 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,935
Number of Sequences: 28952
Number of extensions: 360333
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)