Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0629
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.38 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.67 

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 247 CYRGPVAPGQPAPLVQIIVNVNQPGADAAI-IPQPVIVDESDEVKPD 384
           CYR    PG       I+VN   PG    + +   VI+D  + +  D
Sbjct: 83  CYREDCIPGDGNKRSIIVVNRKMPGPSVEVCLGDEVIIDVVNHLSSD 129


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 280 APLVQIIVNVNQPGADAAIIPQPVIVDESDE 372
           A +V +I N+  PG+D    P P +    +E
Sbjct: 400 AAIVHLIANLPSPGSDQRSTPSPRVYGNVNE 430



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 139 FVQMLEKESSGGWVCAGAVDSVQNGLQL 56
           F+++ ++ +   +VC   + S Q GLQL
Sbjct: 333 FLEIDDQGTVESFVCVNTLVSEQEGLQL 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,495
Number of Sequences: 336
Number of extensions: 2134
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)