Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0629
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    30   0.31 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.31 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   2.2  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    26   3.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   3.8  

>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 369 IRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCDWST 253
           IR+V ND     S ++ W+  +  ++ +   L +CD++T
Sbjct: 164 IRVVGNDAAEKLSILAGWISRIDRNVPDYGELTYCDFNT 202


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 241 GHDWLSDSTTVGKREVDDFGSEDRL---LYGVESDEDFVQMLEKESSGGWVCAGAVDS 77
           G D  SD +  G+ +VDD   ++R    L  VESD+DFV  +   +  G     + DS
Sbjct: 279 GSDLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDFVAPVNGSNGNGITALDSTDS 336


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 309 HVHNDLNERSGLAWCDWSTITGEGTIG 229
           H +  +N++    +C W  IT +GT G
Sbjct: 204 HTYKFVNDKGEFYYCKWHFITNQGTKG 230


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 357 NNDGLGNDSCISAWLVHVHNDLNERSG 277
           N+  + +   +  W+   HND+NER G
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVNERLG 164


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 244 GGHDWLSDSTTVGKREVDDFGSEDRL 167
           G H+ +  +T V +R V +FG  DR+
Sbjct: 604 GAHNDIDKATQVARRMVTEFGMSDRI 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,978
Number of Sequences: 5004
Number of extensions: 33871
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)