Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0629
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0690 + 26303733-26306540 31 0.55
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 2.2
02_01_0092 - 650534-650553,650638-651013,651125-651349 29 2.2
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 3.9
11_06_0535 - 24740950-24741089,24741358-24741451,24741535-247416... 29 3.9
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 5.1
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 28 6.8
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 28 6.8
12_01_0305 + 2304572-2304677,2305414-2305481,2305585-2305716,230... 27 8.9
11_06_0285 - 21914563-21914707,21914954-21915078,21915215-219153... 27 8.9
11_04_0009 - 12132781-12133272 27 8.9
07_01_0182 + 1280479-1280754,1281232-1282089 27 8.9
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 27 8.9
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415... 27 8.9
>11_06_0690 + 26303733-26306540
Length = 935
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 167 EPVFGPEIIDFPLPDGGAVTEPIVP-SPVIVDQSHQASP 280
+PVF P D P P+ A TEP P P V H++SP
Sbjct: 575 QPVFVPAAKDSP-PESAAATEPPQPLLPATVGSQHESSP 612
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +2
Query: 20 AASPIKPAETNAELQAILDAIHS-PSTDPXXXXXXXXXXXXXXXXXNPIQEPVFGPEIID 196
A +P+ TN + + I + PST+P P+ P P
Sbjct: 255 ATNPVTVPATNPAMNPVTPGIVTVPSTNPATGYSNNPNLPPLYPEPTPVTMP--DPTTTT 312
Query: 197 FPLPDGGAVTEPIVPSPV 250
P P VT P +PSPV
Sbjct: 313 TPTPFMNPVTAPTMPSPV 330
>02_01_0092 - 650534-650553,650638-651013,651125-651349
Length = 206
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 268 VRLVHDNRGG---HDWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFV 134
+RL D+ G D +S + G + DD+G RL + +D DFV
Sbjct: 155 MRLRRDSSGSAADDDRMSSMSCSGSPDDDDYGGSSRLCQWITTDSDFV 202
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 235 DWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFVQMLEKE 116
DWLSDS VGK ++ + + V ++ D +Q EKE
Sbjct: 840 DWLSDSGVVGKIKLASVQLAKKYMNRVATELDALQGTEKE 879
>11_06_0535 -
24740950-24741089,24741358-24741451,24741535-24741690,
24741782-24741841,24741930-24742142,24742423-24742492,
24746129-24746463,24747616-24747647,24747749-24747776
Length = 375
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 169 LLYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQL 56
LL+GVE D DF + L KE S V G+V ++N +++
Sbjct: 305 LLFGVEDDMDFARELIKEES-VLVLPGSVIGLKNWIRI 341
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 158 PIQEPVFGPEIIDFPLPDGGAVTEPIVPSPVIV 256
P+Q PV P PLP A EP+ P PV V
Sbjct: 22 PVQVPVPPPP--PPPLPPAAAAVEPLPPQPVAV 52
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 246 GEGTIGSVTAPPSGRGKSMISGPKTGS 166
G G +V PPS RG M++GP+ S
Sbjct: 201 GTGFGSAVAPPPSPRGIPMVAGPRPAS 227
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 246 GEGTIGSVTAPPSGRGKSMISGPK 175
G G G+V PPS RG M +GP+
Sbjct: 156 GIGFGGAVAPPPSPRGTPMAAGPR 179
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 252 ITGEGTIGSVTAPPSGRGKSMISGPK 175
+ G G V PPS RG M SGP+
Sbjct: 254 VFGGGAAAGVAPPPSLRGMPMASGPR 279
>12_01_0305 +
2304572-2304677,2305414-2305481,2305585-2305716,
2307813-2307971,2308170-2308547
Length = 280
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 187 NHRLPSSRRWCCH*ANRALPCYRGPVAPGQPAPLVQIIVNVNQ--PGADAAIIPQ 345
N+ RR H A P + P+AP P P++ + ++Q PG + PQ
Sbjct: 164 NNLKQHQRRMGLHPQPSAAPAFPAPMAPLHPPPVLTAAMPISQAAPGNNGCRSPQ 218
>11_06_0285 -
21914563-21914707,21914954-21915078,21915215-21915382,
21917184-21917475,21917927-21918096
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 134 ADAREGEQRWLGLCWGCG*RPEWLAA 57
ADA + RWL CWG G W++A
Sbjct: 144 ADAED--DRWLPECWGRGIAAHWVSA 167
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 179 RRQAPVWG*ERRGFRADAREGEQRWLGLCWGCG 81
RR+ W ERR + ++R ++R +G GCG
Sbjct: 106 RRRGEAWRRERRDSKIESRPSQRRRVGGRRGCG 138
>07_01_0182 + 1280479-1280754,1281232-1282089
Length = 377
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 256 HDNRGGHDWLSDSTTVGKREVDDFGS 179
HD+ GG D D T+V +EVD S
Sbjct: 339 HDSNGGSDSKKDQTSVDVQEVDSAAS 364
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 167 EPVFGPEI-IDFPLPDGGAVTEPIVPSPVIVDQSHQ 271
+PVF P + ID PDG + + P+ D +H+
Sbjct: 159 QPVFSPSVLIDMMKPDGSSAIPILSGDPLSADLAHE 194
>02_02_0444 +
10340927-10341063,10341157-10341241,10341480-10341537,
10343738-10345885,10345943-10346388
Length = 957
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 253 DNRGGHDWLSDSTTVGKREVDDFGSEDRLLYGVESDEDFV-QMLEKESSGGWVCAGA-VD 80
D GG WL D TVG + G D + G++ + + L++ GGW+ GA V
Sbjct: 128 DEGGGGGWLYDGATVGGLD----GGGDVVGGGLDGGGEVLGGGLDEAGGGGWLYDGATVG 183
Query: 79 SVQNGLQLSISLSGFDGASG 20
+ G + G DG G
Sbjct: 184 GLVGG--GDVVGGGLDGGGG 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,136
Number of Sequences: 37544
Number of extensions: 279944
Number of successful extensions: 921
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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