Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0629
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   34   0.080
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       29   4.0  
SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  

>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 157 VESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQLSISLSGFDGASGSH 14
           V  DED VQ+++ +   G + AG +    N +  +    GFDG++ S+
Sbjct: 226 VLQDEDVVQVVKNDDDSGGIVAGGLGVTGNNVAAAAGGDGFDGSNDSY 273


>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 157 PHTGACLRTRNHRLPSSRRWC-CH*ANRALPCYRGPVA-PGQPAP 285
           P  GAC   R+ R+PSSR    C       P  RGPV  PG P P
Sbjct: 36  PDRGACGACRSARVPSSRSVVGCGGLRAGGPGRRGPVGPPGVPGP 80


>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 202 REVDDFGSEDRLLYGVESDEDFVQMLEKESSGGWVCAGAVDSV 74
           R VD+ G  DRL + + S+  F Q+ ++  S  +V     DSV
Sbjct: 538 RPVDNQGLSDRLNFSLRSNTHFSQLRQRSQSPNFVIHHYADSV 580


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 384 VGFDFIRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCDWSTITGEGTI 232
           +G D +  +N + +  DSC    L  VH D  E S       +T+T  GTI
Sbjct: 1   MGLDLVPRINGEMVDADSCSVVHLYQVHLDSEEAS-------NTVTSRGTI 44


>SB_48165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 223 DSTTVGKREVDDFGSEDRLLYG 158
           D+ T+G R+V D  +EDR +YG
Sbjct: 283 DNITIGDRQVYDITTEDRQVYG 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,317,192
Number of Sequences: 59808
Number of extensions: 288588
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)