Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0629
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    31   0.49 
Z92838-7|CAB07405.1|  593|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    27   8.1  
AF286205-1|AAK28740.1|  593|Caenorhabditis elegans C kinase adap...    27   8.1  

>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 232 NRALPCYRGPV-APGQPAPLVQIIVNVNQPGADAAIIPQPVIVDESD--EVKPD 384
           N   P  RGP+ +     PL  + + ++ PG  +A  P PV+  E D  +VKPD
Sbjct: 57  NGDCPICRGPIDSQIFKKPLQAVDLKMDIPGTPSAAAPDPVVKQEVDDEDVKPD 110


>Z92838-7|CAB07405.1|  593|Caenorhabditis elegans Hypothetical
           protein T03D8.1a protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 298 IVNVNQPGADAAIIPQPVIVDES 366
           +V+  QP  DAAI+P P+  D+S
Sbjct: 30  LVSEQQPSFDAAIVPMPIPNDKS 52


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -3

Query: 100 VCAGAVD---SVQNGLQLSISLSGFDGASGSHSY 8
           +CAGA +   ++   ++  ++L GFD A GS+SY
Sbjct: 358 ICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSY 391


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -3

Query: 100 VCAGAVD---SVQNGLQLSISLSGFDGASGSHSY 8
           +CAGA +   ++   ++  ++L GFD A GS+SY
Sbjct: 358 ICAGAEEERVTMSEAVRELLTLEGFDQAPGSNSY 391


>AF286205-1|AAK28740.1|  593|Caenorhabditis elegans C kinase adapter
           1 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 298 IVNVNQPGADAAIIPQPVIVDES 366
           +V+  QP  DAAI+P P+  D+S
Sbjct: 30  LVSEQQPSFDAAIVPMPIPNDKS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,449
Number of Sequences: 27780
Number of extensions: 208284
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)