Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0629
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66230.1 68418.m08343 expressed protein                             31   0.61 
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p...    29   2.4  
At1g19370.1 68414.m02410 expressed protein                             29   2.4  
At5g19130.2 68418.m02277 GPI transamidase component family prote...    27   7.5  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    27   7.5  
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p...    27   7.5  
At1g68510.1 68414.m07826 LOB domain protein 42 / lateral organ b...    27   9.9  

>At5g66230.1 68418.m08343 expressed protein
          Length = 329

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 22/77 (28%), Positives = 31/77 (40%)
 Frame = -3

Query: 232 WLSDSTTVGKREVDDFGSEDRLLYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQLS 53
           W   +    K E  D   E+   YG E DE++    E+E  G     G VD +  G++  
Sbjct: 223 WSMQANASAKDEEYDDEEEEAYSYGEEYDEEYYDEEEEEEEG-----GIVDGLCEGIRKM 277

Query: 52  ISLSGFDGASGSHSYDS 2
              + F G      YDS
Sbjct: 278 SVETDFAGKHTRFVYDS 294


>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 484

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 321 AWLVHVHNDLNERSGLAWCDWSTITGEGTIGSVTAPP 211
           AWL+H H D +   GLA   +    GEG + SV +PP
Sbjct: 443 AWLMHCHIDSHIFWGLAMV-FLVENGEGHLQSVQSPP 478


>At1g19370.1 68414.m02410 expressed protein
          Length = 605

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 277 AGLVRLVHDNRGGHDWLSDSTT---VGKREVDDFGSEDRLL 164
           A L+  +H+   G DW S+S +   VGK +VDD      LL
Sbjct: 204 AVLLHRIHEGSNGEDWNSNSVSMEHVGKFDVDDSADPVTLL 244


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 417 AFFSLFGDNNGVGFDFIRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCD 262
           + FSL      +  D I LV +   G+   ++AWL   H+   + S L  CD
Sbjct: 197 SLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCD 248


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 417 AFFSLFGDNNGVGFDFIRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCD 262
           + FSL      +  D I LV +   G+   ++AWL   H+   + S L  CD
Sbjct: 200 SLFSLLSRVTWLSKDIIWLVADSRYGDYRPVAAWLTEYHSPSFKVSDLLKCD 251


>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 565

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 318 WLVHVHNDLNERSGLAWCDWSTITGEGTIGSVTAPP 211
           WL+H H D++ + GLA   +    G G + ++ APP
Sbjct: 525 WLMHCHLDVHIKWGLAMA-FLVDNGVGELETLEAPP 559


>At1g68510.1 68414.m07826 LOB domain protein 42 / lateral organ
           boundaries domain protein 42 (LBD42) identical to LOB
           DOMAIN 42 [Arabidopsis thaliana] GI:17227174; supported
           by full-length cDNA gi:17227173.
          Length = 233

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 112 SGGWV-CAGAVDSVQNGLQLSISLSGFDGASGSH 14
           SG W  C  AVD+V NG  L I+ +    AS SH
Sbjct: 90  SGNWAQCQAAVDAVLNG--LPITHTPLPSASASH 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,712
Number of Sequences: 28952
Number of extensions: 198113
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)