Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0625
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    27   3.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.8  

>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 390 KKI-NSFFLHINYINQN*KVKYFRKILIKYTFK 295
           KK+ NS FLH    +QN +V+  ++I++  ++K
Sbjct: 106 KKVDNSLFLHKKISSQNAQVRLIKRIVMSLSYK 138


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 156 MATYSNPGFYSNPNDKSRLTPINSEWTP 239
           +++YS+P     P+  S  +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,064
Number of Sequences: 5004
Number of extensions: 47035
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)