Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0625
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                      29   4.6  
SB_1072| Best HMM Match : Tektin (HMM E-Value=2.5)                     28   8.0  

>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 76  LM*VRSICVVHYKFYFCFCTMATLPG 153
           L+ V  IC VH  FY+C C  +++ G
Sbjct: 55  LVAVLRICSVHLDFYYCTCVWSSMAG 80


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 33 VTRKCISLVSPYFNIDVSQIDL 98
          +  KC  L+SPY ++D+   DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34


>SB_1072| Best HMM Match : Tektin (HMM E-Value=2.5)
          Length = 465

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 450 RKNRRDRSNQTK*STKHRGIARTKTRLNLSIIKDHVRSIEQ 572
           R+  ++ + Q + + K+  +A  K + NL+ I+DH+R +E+
Sbjct: 354 RERCKEMAEQAEAAYKNVTLAEQKIKANLNDIRDHLRIMEE 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,054,532
Number of Sequences: 59808
Number of extensions: 323876
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)