Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0624
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    29   0.59 
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.2  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.2  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   4.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.2  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    26   4.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.6  

>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 188 NLFYYCVWGRKVLRHCPSTLHFTKSSRFATGLGTQAV 298
           NL+   VW R++LR+ P  L   KSSR+A G+  Q +
Sbjct: 184 NLYLVNVWEREILRNWPDAL---KSSRYA-GIWRQGI 216


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 108 NPKLISLKMVAQLTLIFTGYCPMKETAIYSIIVFGEEK 221
           N  LI L+ ++++  I+TGYC  ++ +++ II    EK
Sbjct: 396 NLGLIFLESLSEIGQIYTGYC-NRQDSVFKIITKWREK 432


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 224 RLFFPKHNNRIDCSFLHGAVASEYEG*LGNHFQGNQF 114
           +L+  KHN +I  SF    ++++ +G LG H   + F
Sbjct: 362 KLYASKHNFQIRYSFNQELLSTKSDGLLGRHLAHSNF 398


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 411 RRISRLSSCGSIFRLQIDGYFDFTNHSPG 325
           RR S+++  GS+F   I  +F F  H  G
Sbjct: 219 RRCSKINITGSVFDNFIPSFFSFGTHGDG 247


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 275 TGLGTQAVHHLSTRTPWPGE*LVKSKYP 358
           TG+ T+    L T+T W  + L+ +KYP
Sbjct: 630 TGVYTETESSLVTQTGWALDALINAKYP 657


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 440 QTMFWFIYFTCSY*MILLYSF 502
           +++F+ ++F CS+   LLYSF
Sbjct: 15  ESLFFRLFFVCSFFFPLLYSF 35


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 416 LIPFY*MHQTMFWFIYFTCSY*MILLYSFKK*TEIFVNKN 535
           L+PFY ++   F F+ FT    +  +Y   +  E+F++++
Sbjct: 4   LVPFYFINILSFGFLIFTVLLYISSVYVLPRYNELFISRS 43


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 341  VKSKYPSICKRKMLPQDDNLDIRRTLIPFY*MHQTMFWFIYFTCSY*MILLYSF 502
            ++ K     K K + Q D L ++R  + ++     ++W  + +CS  +ILLY F
Sbjct: 861  IRQKVTEDDKGKCVAQTDEL-VQRGKVKWH-----VYWMYFKSCSIGLILLYFF 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,334
Number of Sequences: 5004
Number of extensions: 42382
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)