Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0624
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)                33   0.20 
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)
          Length = 134

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 137 CPVNPHIHWLLPHEGNCNLFYYCVWGRKVLRHC 235
           C   PH  +L P   +C  +Y+C WG+ V + C
Sbjct: 22  CADKPHGAYL-PDSTSCQHYYHCTWGKAVRKDC 53


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 122  FLENGCP-VNPHIHWLLPHEGNCNLFYYCVWGRKVLRHCP 238
            F ++G P  NP  +W     G C + +YC  G +    CP
Sbjct: 2819 FCKSGSPDPNPDGYWPPVEAGPCKMGHYCPKGTQAPLPCP 2858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,839
Number of Sequences: 59808
Number of extensions: 307620
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)