Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0624
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15900.1 68418.m01860 expressed protein several hypothetical ...    29   2.0  
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    27   8.2  
At2g40960.1 68415.m05058 expressed protein                             27   8.2  
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP...    27   8.2  
At1g76120.2 68414.m08840 tRNA pseudouridine synthase family prot...    27   8.2  
At1g76120.1 68414.m08839 tRNA pseudouridine synthase family prot...    27   8.2  

>At5g15900.1 68418.m01860 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 426

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 369 LQIDGYFDFTNHSPGHGVLVER*CTA-CVPRPVANLDDFVKCNVLGQCLKTFLPQTQ 202
           L+ DG+     H P   V +   C   C+P P+ NL+DF+   +  +  K FL Q +
Sbjct: 366 LRPDGHPSRYGHIPEANVTLYNDCVHWCLPGPIDNLNDFLLAMLKREEDKGFLAQVR 422


>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 460 NKPKHCLVHLIKGNQ-RSSNIKIVVLREHFSFTD 362
           +KPKH L+  IKGNQ R + I +  +R  F +T+
Sbjct: 284 SKPKHVLLLEIKGNQYRPTKIPLTSVRP-FEYTE 316


>At2g40960.1 68415.m05058 expressed protein
          Length = 351

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 280 PWDAGCASSFDKNAVARRMISEVEVSVNL*TKNAPARR 393
           PW   C+SS D+N V +    E + + N+  K+ PA R
Sbjct: 186 PWRVNCSSSRDENQVLKNGNIEADKN-NISRKSNPASR 222


>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
           TBP-interacting protein TIP120 GI:1799570 from [Rattus
           norvegicus]
          Length = 1219

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 494 IIKSSNRNM*NK*TKTLFGAFNKRESTFVEYQDC 393
           I+KS NR +  K  KT  GAF+      V   DC
Sbjct: 428 IVKSINRQLREKSVKTKVGAFSVLRELVVVLPDC 461


>At1g76120.2 68414.m08840 tRNA pseudouridine synthase family protein
           similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 356

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 408 RISRLSSCGSIFRLQIDGYFDFTNHSPGHGVLVER*CTACVPRPVANLD--DFVKCNVLG 235
           R SR+ SC     +    + +FT  +        R   +     V NLD  DF+KC VLG
Sbjct: 267 RFSRILSC----YVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLG 322

Query: 234 Q 232
           +
Sbjct: 323 K 323


>At1g76120.1 68414.m08839 tRNA pseudouridine synthase family protein
           similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 463

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 408 RISRLSSCGSIFRLQIDGYFDFTNHSPGHGVLVER*CTACVPRPVANLD--DFVKCNVLG 235
           R SR+ SC     +    + +FT  +        R   +     V NLD  DF+KC VLG
Sbjct: 267 RFSRILSC----YVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLG 322

Query: 234 Q 232
           +
Sbjct: 323 K 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,551
Number of Sequences: 28952
Number of extensions: 217562
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)