Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0623
         (431 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22B63 Cluster: Zinc knuckle family protein; n=1; Tetra...    33   1.9  
UniRef50_Q54DK4 Cluster: Putative uncharacterized protein ak1; n...    31   7.8  
UniRef50_Q4N6Q9 Cluster: Putative uncharacterized protein; n=2; ...    31   7.8  

>UniRef50_Q22B63 Cluster: Zinc knuckle family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Zinc knuckle family
            protein - Tetrahymena thermophila SB210
          Length = 1213

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 278  NYRTSIRFLMNSMNLITFQIVLQIFQYKIQCNLNTQNPY 162
            N+R  I+ L  S+N++ F I+ Q      Q N N QN Y
Sbjct: 1084 NFRKQIKALQKSVNMLQFTILQQFQNLSKQANTNIQNDY 1122


>UniRef50_Q54DK4 Cluster: Putative uncharacterized protein ak1; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein ak1 - Dictyostelium discoideum
           AX4
          Length = 1352

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 333 HTSNITGXXXXXXXXXX*ELQNINQIFNEFDESNNISNRITNLPV*N 193
           H +NI              + N N I N F   NNISN + N+ + N
Sbjct: 149 HNNNINNNNNNINNNNNNNINNNNNIINNFSNINNISNGMNNISLNN 195


>UniRef50_Q4N6Q9 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 874

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 296 FITFYENYRTSIRFLMNSMNLITFQI-VLQIFQYKIQCNLNTQNPYCYSLFLGTVPS 129
           FIT +ENY T +    +  +L+ +QI  +Q+ +     N+   N YC S    T+ S
Sbjct: 558 FITTFENYSTILAIGNHLGHLLLYQIPKMQLIKLIYPSNMTNANVYCSSYSSNTLTS 614


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,638,085
Number of Sequences: 1657284
Number of extensions: 6732892
Number of successful extensions: 13569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13562
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)