Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0623
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    28   0.70 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   5.0  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 316 CYVACMLTFRLWEWFPFIM*KHCHELIVTENIYPSYG 426
           C+ AC L     E  P  M   C  ++    IYP YG
Sbjct: 280 CFPACKLVAAGGEMVPANMYHTCKRVLPNATIYPQYG 316


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 213 TNLPV*NTV*SKYAKPILLLVIFRNSSLSPVLQIFTLLEIMK 88
           TN+ + N + S ++KP++L  +  N      L + TLL   K
Sbjct: 340 TNIIIENILPSSFSKPVVLKALNGNDKFVCFLTVNTLLASFK 381


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 139 QFPQSCITNIYTIRNNEMSGCCILNLIN 56
           Q PQ+ + +I +  NN+ S C I+ +I+
Sbjct: 108 QEPQTTLPDIISTVNNDKSTCLIIQVID 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,391
Number of Sequences: 5004
Number of extensions: 32454
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)