Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0623
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     29   1.6  
06_03_0596 + 22608835-22610263,22610411-22610531,22610765-226118...    27   8.6  
03_06_0266 + 32746379-32746836,32747898-32748273,32748367-327486...    27   8.6  

>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 197 YTGRFVIRFEMLLDSSNSLKI*LMFCSSHKM 289
           Y G FVI F  LL  + +L++ LMF +S+ M
Sbjct: 629 YHGSFVIPFGNLLSKAKALRVILMFNASYDM 659


>06_03_0596 +
           22608835-22610263,22610411-22610531,22610765-22611864,
           22611969-22612327
          Length = 1002

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 CSVVLIKCNK*PNNITLLCCLYADVSALGMVPFHY 371
           C+  LI C+  P+NI L   + A VS  G+  F Y
Sbjct: 824 CATPLIHCDLKPSNILLDLDMVAYVSDFGLARFVY 858


>03_06_0266 +
           32746379-32746836,32747898-32748273,32748367-32748640,
           32750605-32750789
          Length = 430

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 343 ETSAYKQHNRVILFGYLLHFMRTTEHQSDF 254
           E+S Y   NR  ++GY   F RT    SDF
Sbjct: 140 ESSPYTLKNRGSMWGYKRFFRRTALETSDF 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,196
Number of Sequences: 37544
Number of extensions: 162004
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)