Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0623
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.12 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   3.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   7.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 299 LFITFYENYRTSIRFLMNSMNLITFQIVLQIFQYKIQCNLNTQ 171
           L+     NY   IR +MN+   +T Q+ L++ Q  I+ NL  Q
Sbjct: 37  LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQL-IEMNLKNQ 78


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
          protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 3  IVGVLVIFNI*IQNYLFALIRFNMQH 80
          IVG +VI +  I    +ALI FN+ H
Sbjct: 14 IVGTVVIVSSLIILISYALILFNILH 39


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 375 LHNEREPFPKPKRQH 331
           LHNE+E F + +  H
Sbjct: 255 LHNEKEKFLEERTSH 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,350
Number of Sequences: 438
Number of extensions: 2430
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)