Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0623
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1...    27   7.2  
At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative (CH...    26   9.6  

>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
           SP|P14714 Phytochrome C {Arabidopsis thaliana}
          Length = 1111

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 165 ILLLVIFRNSSLSPVLQIFTLLEIMKCQGVA 73
           +L  ++FRN+ +  V Q   +++++KC G A
Sbjct: 410 VLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440


>At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative
           (CHX26) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 780

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 KYAKPILLLVIFRNSSLSPVLQ 115
           KY+ P+LLL+I   SSLS V Q
Sbjct: 34  KYSTPLLLLLISLVSSLSSVFQ 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,485,250
Number of Sequences: 28952
Number of extensions: 151235
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)