Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0621
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    30   0.43 
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    30   0.43 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   1.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.3  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    27   3.1  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.1  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   7.1  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   7.1  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   7.1  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   7.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   7.1  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   9.4  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 325  PTRTGPAHKNLDLTRYHSTSRRKPSA 402
            PT+TGPA+   DLT Y    R KP A
Sbjct: 1314 PTKTGPANVFPDLTGYTPVDRAKPVA 1339


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 340 DRCALGTEDGFFSRAAGSAHCGGVWE 263
           DR AL  ED F+++A+G+ + GG W+
Sbjct: 30  DRFALD-EDNFYAKASGNLYLGGTWK 54


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 252 ASPISQTPPQCALPAALLKN--PSSVPNAHRSSTQKP 356
           +S I   P +  LP ++L    P  VPN +RSST  P
Sbjct: 201 SSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSP 237


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 213 KNSVRKVVHVIPSASPISQTPPQCALPAALLKN-PSSVPNAHRSSTQKPRSNSISFDESQ 389
           +++ + +  V+PS S    TPP+ A PA  +++   + P+   SS      N ++  E+ 
Sbjct: 239 RSAAQAMATVVPSVSTPGGTPPRFASPALTVESMVHAAPSTTTSSRFSKFFNGLAGPETS 298

Query: 390 ET 395
           +T
Sbjct: 299 KT 300


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +3

Query: 162 LFQHTGRNHLLHHSWRYKNSVRKVVHVIPSASPISQTP 275
           + Q      L + +WR+   +R  +  +P   P+ +TP
Sbjct: 100 VMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTP 137


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 210 YKNSVRKVVHVIPSASPISQTPPQCALPAALLKNPSSVPNAHRSS 344
           Y  ++R+V+ +I S + I      C    A   N SSV N H +S
Sbjct: 54  YNQALREVLELIESGASIDFISQYCLEKLASSDNDSSVHNHHDNS 98


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 243 IPS-ASPISQTPPQCALPAALLKNPSSVPN 329
           IPS A PI  + P  A PAA +K+P S P+
Sbjct: 160 IPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 240 VIPSASPISQTPPQCALPAALLKNPSSVPNAHRSSTQKPRSNS 368
           V+PS + IS +PP  +        P+ +P +   S+  P S S
Sbjct: 454 VVPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSNAPHSQS 496


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -2

Query: 524 NSPQTLKDRASETFASLRWQAVFDNNRF*VFRKLMTSLEIHAEGFLRLVE*YRVRSRFLC 345
           N+ QT++   +E ++       + + +F VF+K    +++H E    + +  +  SRFLC
Sbjct: 84  NAFQTIESLGAEKYSVTMEPCTYTDEKFEVFKKY--QMQVHLEKEEEITK--KGFSRFLC 139

Query: 344 AGPV 333
             P+
Sbjct: 140 NSPL 143


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 101 TANRFLQGGS*SRIPLKCLMSIPAHRAEPSTP--PLLEVQE 217
           T N+ + GG     P+     IPA  AEP+ P  P  EV E
Sbjct: 875 TVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVE 915


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 261 ISQTPPQCALPAALLKNPSSVPNAHRSSTQKPRSNSISFDESQETFS 401
           I Q     AL AA+L N + +P  H+SS++ P S S     SQ+T S
Sbjct: 501 IKQAIEHQALNAAIL-NKTQLPYFHQSSSELPISASKRAALSQQTES 546


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 306 KNPSSVPNAHRSSTQKPR 359
           KNP S PN+H  S   PR
Sbjct: 22  KNPVSTPNSHFRSASNPR 39


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 548 CLALANFTNSPQTLKDRASETFASLRWQAVFD 453
           C    +FTN  QT + R+ E     RW A  D
Sbjct: 365 CWTRKHFTNDVQTRQYRSPEVILGCRWGASAD 396


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 255 SPISQTPPQCALPAALLKNPSSV 323
           +P     P CALPA  LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 79  PIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGT 213
           P + Q   + S  +  V+++  + +    SSTP  TIYS T G T
Sbjct: 108 PSSSQTISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTT 150


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 210 YKNSVRKVVHVIPSASPISQTPPQCALPAALLKNPSSVP-NAHRSSTQKPRSNSISF 377
           + N +   +H  P +SP S  PP C         P   P  A   S+Q  +  S+++
Sbjct: 195 HPNRLPHPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNY 251


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 70  SASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGT-IYSTTPGGTRIVYERSF 237
           + SP    + HS+  P      +  A +  ++++TP G   Y +   G  + Y  SF
Sbjct: 256 TVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVSSF 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,379
Number of Sequences: 5004
Number of extensions: 67747
Number of successful extensions: 225
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)