Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0621
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806...    30   1.8  
08_02_0244 - 14717897-14718037,14719054-14719155,14719238-147193...    29   4.2  
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14...    28   7.4  
03_01_0564 - 4176177-4178096                                           28   9.7  

>01_01_1022 -
           8064032-8064657,8064823-8064893,8065926-8066047,
           8066540-8066689,8067153-8067179,8067485-8067552,
           8067679-8067874
          Length = 419

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 246 PSASPISQTPPQCALPAALLKNPSSVPNAHRSSTQKPRSNSISFDESQETFSMDL 410
           P   P  Q   Q   P A    P+  P A  +  QKP   S+S++E  + FS+ +
Sbjct: 7   PQQQPQQQQEQQ---PVAAAAVPTPAPPASEAQPQKPTRVSLSYEEISKLFSLPI 58


>08_02_0244 -
           14717897-14718037,14719054-14719155,14719238-14719309,
           14719369-14719480,14719640-14719707,14719801-14719908,
           14720659-14721078,14722077-14722161,14723068-14723147,
           14723336-14723413,14724074-14724213,14724324-14724738
          Length = 606

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 161 SIPAHRA-EP-STPPLLEVQE*CTKGRSCYPFGISDFPNATAMCTSRSPTEESVFGTQRA 334
           S  AHR   P S+PPL       + G S +P   S  P ++  C+ R     S  G    
Sbjct: 10  SASAHRLPRPISSPPLGRAASATSIGSSFFPLCSS--PPSSGSCSLR---RASSAGGASE 64

Query: 335 PVQHTKTSI*LDIIRRVAGNLQHG 406
           P     TS+  D++RRVAG    G
Sbjct: 65  PEASGATSLDADLLRRVAGAADAG 88


>03_01_0017 -
           148934-148999,149000-149074,149343-149408,149737-149793,
           150422-150537,150821-151103,151413-151468,151585-151682,
           152233-152291,152747-152818,152892-153077,153303-153305
          Length = 378

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 325 PTRTGPAHKNLDLTRYHSTSRRKPSA 402
           P   G  HK+LDL + ++T + KP+A
Sbjct: 249 PRAEGEGHKDLDLQKNNATKKDKPAA 274


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 645 FVDYYRMFYCLC*QIRVL 698
           FVDY   FYC C + RVL
Sbjct: 112 FVDYLGFFYCRCERFRVL 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,838
Number of Sequences: 37544
Number of extensions: 469325
Number of successful extensions: 1401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)