Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0621
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)                83   3e-16
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               31   1.4  
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       30   2.5  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      29   4.3  
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      28   7.5  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   9.9  
SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)                28   9.9  
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                28   9.9  
SB_13800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)
          Length = 148

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +1

Query: 67  MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLS 246
           M+ +   R +  +++IPSRRV + DP  MP  YS+TPGGTIYSTTPGGTRI+YER F+L 
Sbjct: 1   MNGTQAERGSPLARAIPSRRVPVHDPNHMPSDYSTTPGGTIYSTTPGGTRIIYERKFLLE 60

Query: 247 LRH 255
           LR+
Sbjct: 61  LRN 63


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/79 (30%), Positives = 36/79 (45%)
 Frame = +1

Query: 40  KLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI 219
           ++T  +  + SAS      T  QS+P     +T P Q+  +  STP  T+Y  T  G  I
Sbjct: 423 QVTGPQIKLPSASGSRHHPTTPQSLPVDMQQVTPP-QVNPITISTPSSTLYDCTYCGDNI 481

Query: 220 VYERSFMLSLRHLRFPKRH 276
             + +     RH  F +RH
Sbjct: 482 TLKSNLQ---RH--FKRRH 495


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 229 RSFMLSLRHLRFPKRHRNVHFPQPY*RIRLRYPTRTGPAHKNLDLTRYHSTSRRKPS 399
           R  M+ L + +    +R V     Y ++RL YP+ + P  K+  LT Y STS   P+
Sbjct: 109 RPTMVRLTYRKVRLTYRKVRLT--YRKVRLTYPSFSSPNGKDGGLTSYISTSFSPPN 163


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 112  IPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERS 234
            +PS  +++  P+    VYS  P G I   +P G +IVY  S
Sbjct: 1125 LPSSEIIVYSPSGEKIVYS--PSGEIIVYSPSGKKIVYSPS 1163


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 237  HVIPSASPISQTPPQCALPAALLKNPSSVPN 329
            HV P A P+SQT      PAA  K P+  PN
Sbjct: 1240 HVNPEARPVSQTKKMAVEPAA-TKAPTPQPN 1269


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 122  GGS*SRIPLKCLMSIPAHRAEPSTPPLLEVQE*CTKGRSCYPFGISDFPNATAMCTSRSP 301
            GG+  R+PL+   S P+     ++     V      GR CYP+G S        C SR  
Sbjct: 1546 GGTAERLPLR--QSAPSRSMAITS----SVDRPSNDGRQCYPWGRSPVGQHPRRCASRDK 1599

Query: 302  TEESVFGTQR 331
            T     G ++
Sbjct: 1600 THGERHGYRK 1609


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = +2

Query: 122 GGS*SRIP---LKCLMSIPAHRAEPST--PPLLEVQE*CTKGRSCYPFGISDFPNATAMC 286
           GG  SRI     K   S P   A+ ST  P +  V      GR CYP+G S        C
Sbjct: 460 GGCDSRISGGRRKGSSSAPPRGAQRSTCRPGVCSVDLPSNDGRQCYPWGWSPIGQYPRRC 519

Query: 287 TSRSPTEESVFGTQR 331
             R  T     G ++
Sbjct: 520 APRDKTHGKRHGYRK 534


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 15  QVSCVEFCKINTTKVFNNVSVTYREAGHPQPIDSFKEGPDHGSRSNA*CLFQHTGRNHL 191
           Q +  ++ +I  T         +++ GH QP + F   P H    N   +FQ    +HL
Sbjct: 246 QAAPPQYQQIQATHQPTQQQTFFQQQGHQQPGNIFDNPPFHPQSPNQPQIFQQQALHHL 304


>SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)
          Length = 455

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 LKNPSSVPNAHRSSTQKPRSNSISFDESQETF 398
           L  P SVP  HR+ST+  ++N++   E  E F
Sbjct: 174 LGGPPSVPPRHRASTEPCQTNNVKPKEFVERF 205


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +1

Query: 202 PGGTRIVYERSFMLSLRHLRFPKRHRNVHFPQPY*RIRLRYPTRTGPAHKNLDLTRYHST 381
           P   R+   ++     RH R  K+  +V   QPY  +  RY   T P        +  S 
Sbjct: 144 PYSVRLSRYKNHTAPFRHARTTKQRPSVTLQQPYSALPSRYNNHTAPLRHATTTIQRPSV 203

Query: 382 SRRKP 396
           + ++P
Sbjct: 204 TLQQP 208


>SB_13800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 562 MFFCCV*LWLTSQTAHRR*KTEQAKHSQACGGKPY-LTITGFKY 434
           +F+ C  LW   QTAHR  + ++ K+   C  + + L I+ F Y
Sbjct: 3   LFYAC--LWCFRQTAHRVIRFQKKKNCAPCEDRTHDLQISRFDY 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,651,529
Number of Sequences: 59808
Number of extensions: 538859
Number of successful extensions: 1385
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)