Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0621
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical p...    32   0.54 
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    31   0.94 
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    31   0.94 
AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm rece...    29   3.8  
Z83246-4|CAB05844.1|  414|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z73908-6|CAA98132.1|  414|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U46671-2|AAA85748.1|  205|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   8.8  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   8.8  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical
           protein F52C9.3 protein.
          Length = 439

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = -1

Query: 351 FVCWTGARWVPKTDSSVGLREVH--IAVAFGKSEM-PKG*HERPFVHYSCTSRSGGVDGS 181
           F+ + GA WV + D + G+R+ +  IAV +G++ + P+   +R FV  +    S G    
Sbjct: 27  FLGYLGADWVYRWDRNQGIRKEYAKIAVKYGETTVSPETRPKRVFVLVNVEGNSRGCFDQ 86

Query: 180 ARCAGIDIRHLSGIR 136
                + + HL+G++
Sbjct: 87  FNKNALPLFHLAGVQ 101


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 216 NSVRKVVHVIPSASPISQTPPQCALPAALLKNPSSVPNAHR 338
           N V    H+IP ASP+S TP +  L  +L    +SV  A R
Sbjct: 761 NVVATSSHLIPDASPVSNTPNEGELQFSLRNYTASVSEAVR 801


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
            protein 5, isoforma protein.
          Length = 1544

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 216  NSVRKVVHVIPSASPISQTPPQCALPAALLKNPSSVPNAHR 338
            N V    H+IP ASP+S TP +  L  +L    +SV  A R
Sbjct: 905  NVVATSSHLIPDASPVSNTPNEGELQFSLRNYTASVSEAVR 945


>AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 238 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +1

Query: 478 LANVSLALSFNVCGLFVKLARAKHNKKTCLTGHHFLFRSLVAL*KLNSLTV-ILLLFLWI 654
           +A+  +++SF +  +F  L+  + +K T LT H   FRS + L  LNSL +  L+   +I
Sbjct: 204 IASTLISISFAMIVIFATLSYKEVSKLTELTSHSEKFRS-IQLQLLNSLVLQSLVPAFFI 262

Query: 655 IIECFIVCVSKY 690
            +  F++ ++ +
Sbjct: 263 QLPSFVLFLAPF 274


>Z83246-4|CAB05844.1|  414|Caenorhabditis elegans Hypothetical
           protein F53B2.6 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 240 VIPSASPISQTPPQCALPAALLKNPSSVPNAHRSSTQK 353
           ++PSASPI    P    PAA+L   +  P  H    ++
Sbjct: 245 IMPSASPIHVGGPPTPPPAAMLPTKNKYPTYHHDLNEE 282


>Z73908-6|CAA98132.1|  414|Caenorhabditis elegans Hypothetical
           protein F53B2.6 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 240 VIPSASPISQTPPQCALPAALLKNPSSVPNAHRSSTQK 353
           ++PSASPI    P    PAA+L   +  P  H    ++
Sbjct: 245 IMPSASPIHVGGPPTPPPAAMLPTKNKYPTYHHDLNEE 282


>U46671-2|AAA85748.1|  205|Caenorhabditis elegans Hypothetical
           protein C14E2.3 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 240 VIPSASPISQTPPQCALPAALLKNPSSVPNAHRSSTQKPRSNSISFDESQETF 398
           V+P+ SP    PP    P  L+    S  +  ++ T     N +S  +  E F
Sbjct: 142 VLPNVSPFPTPPPVPPKPTHLMARMDSQCSGQQAKTSSKAENPVSSAKPDEVF 194


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 159 CLFQHTGRN--HLLHHSWRYKNSVRKVVHVIP-SASPISQTPPQCALPAALLKNPSSVPN 329
           C   H   N  H  H S  + N+V     ++  S+SP   TP  C+LP +   +  S+P 
Sbjct: 704 CHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPES--SSLHSIPT 761

Query: 330 AHRS 341
           A  S
Sbjct: 762 AMTS 765


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 159 CLFQHTGRN--HLLHHSWRYKNSVRKVVHVIP-SASPISQTPPQCALPAALLKNPSSVPN 329
           C   H   N  H  H S  + N+V     ++  S+SP   TP  C+LP +   +  S+P 
Sbjct: 704 CHSSHVTSNSTHSTHISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPES--SSLHSIPT 761

Query: 330 AHRS 341
           A  S
Sbjct: 762 AMTS 765


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 49  PRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTP 177
           PR   I +      +A+ +    +R V + DP   P  YS TP
Sbjct: 424 PRSIYIETGKSTYGEASKTSGNNARSVYLADPVSAPKAYSVTP 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,097,684
Number of Sequences: 27780
Number of extensions: 394793
Number of successful extensions: 1154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)