Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0621
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49150.1 68414.m05510 hypothetical protein 32 0.38
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 29 2.7
At1g01400.1 68414.m00055 hypothetical protein 29 3.5
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 29 4.6
At1g58520.1 68414.m06653 early-responsive to dehydration protein... 29 4.6
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c... 28 6.1
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 28 8.1
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 28 8.1
At1g75210.1 68414.m08737 5' nucleotidase family protein contains... 28 8.1
>At1g49150.1 68414.m05510 hypothetical protein
Length = 148
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 469 HRKLANVSLALSFNVCGLFVKLARAKHNKKTCLTGHHFLFRSLVAL*KLNSLTVILLLFL 648
H+ + L +S VK+ K ++ CL H L R+L+A+ L SL +++++
Sbjct: 53 HKMEEKMDLLISLFRSNNEVKIGSVKPRQRACLWMDHLLMRNLIAVLVLLSLVLVVVVVF 112
Query: 649 WIIIECFIVCVSKYGF 696
++ +V V+ F
Sbjct: 113 SSVVVFPVVVVAVKAF 128
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 246 PSASPISQTPPQCALPAALLKNPSSVPNAHRSSTQKP 356
P+A+P TPP A PA PS P+ T P
Sbjct: 51 PAATPAPATPPPAATPAPATTPPSVAPSPADVPTASP 87
>At1g01400.1 68414.m00055 hypothetical protein
Length = 204
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 148 QMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRHLRFPKRHRNVHFPQP 300
Q PD+ SS+ GT+ S R YE ++ L R ++ K RN H P
Sbjct: 138 QEPDLPSSSGIGTM-SANSHDDRRAYELAYPLPSRDIQSKKELRNAHLKTP 187
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 19 CLVWNFVKLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYS 195
CL+ + V +T + S+ P+ + H ++PS P P VY T +Y+
Sbjct: 11 CLILSLVTITTADYYSPSSPPVYKSPEHKPTLPS-------PVYTPPVYKPTLSPPVYT 62
>At1g58520.1 68414.m06653 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 657
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 134 IRTLLEGIDWLWVACLAI 81
I L EG WLWV CLA+
Sbjct: 45 IENLKEGSKWLWVHCLAL 62
>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain; snoR29 gene for small
nucleolar RNA GI:15706258
Length = 917
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 75 VTYREAGHPQPI-DSFKEGPDHGSRSNA*CLFQHTGRNHLLHHSWRYKNSVRKVVHVIPS 251
V R++ P I DS + P +++A L N L +W + +V+ I
Sbjct: 488 VPERQSNMPSRIADSSSKNPAPSGQTHAQLL------NALQQQAWSNYGGLSEVIKNINQ 541
Query: 252 ASPISQTPPQCALPAALLKNPSSVPNAHRSST 347
+ S PPQ + +PS P++ +SS+
Sbjct: 542 SHASSSGPPQAGKFGSTCSDPSGGPSSSKSSS 573
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 246 PSASPISQTPPQCAL--PAALLKNPSSVPNAHRSSTQKPRSNSISFDESQETFSMD 407
P ASP TPP A PA L P+ VP + T KP S S S S S D
Sbjct: 96 PVASPPPATPPPVATPPPAPLASPPAQVPAP--APTTKPDSPSPSPSSSPPLPSSD 149
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 246 PSASPISQTPPQCAL--PAALLKNPSSVPNAHRSSTQKPRSNSISFDESQETFSMD 407
P ASP TPP A PA L P+ VP + T KP S S S S S D
Sbjct: 96 PVASPPPATPPPVATPPPAPLASPPAQVPAP--APTTKPDSPSPSPSSSPPLPSSD 149
>At1g75210.1 68414.m08737 5' nucleotidase family protein contains
Pfam profile: PF05761 5' nucleotidase family
Length = 642
Score = 27.9 bits (59), Expect = 8.1
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Frame = +1
Query: 67 MSASPIARQATHSQSIPSRRVLITDPAQM---PDVYSSTPGGTIYSTTPGGTRIVYERSF 237
MS I+R T S + PS + + +P + + S TP S T + S
Sbjct: 1 MSEWFISRNPTFSTAFPSSCITVVNPNFILLSSEFDSYTPQCLFNSLTTTMRLSKRQLSL 60
Query: 238 MLSLRHLRFPKRHRNVHFPQPY*RIRLRYPTRTGPAHKNLDLTRYHSTSRRKPSA 402
LSL F R R HFP Y R + TG + L S +KPSA
Sbjct: 61 PLSLCFSTFSPRSRFHHFPGKYPAPRREFLHTTGTS----QLCFKSSMEDQKPSA 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,921,242
Number of Sequences: 28952
Number of extensions: 361200
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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