Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0620
(685 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length... 52 1e-05
UniRef50_Q9BSW5 Cluster: RPS2 protein; n=26; Coelomata|Rep: RPS2... 52 1e-05
UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284; Eukary... 52 1e-05
UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5; Eukaryot... 50 7e-05
UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S riboso... 48 2e-04
UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8; Euthe... 46 0.001
UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 ... 44 0.003
UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2; Cyt... 40 0.075
UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26; Eukaryo... 36 0.92
UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S riboso... 35 1.6
UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n... 35 2.1
UniRef50_Q8I5K5 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_A3BJ14 Cluster: Putative uncharacterized protein; n=3; ... 33 4.9
>UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length
enriched library, clone:1200003H09 product:ribosomal
protein S2, full insert sequence; n=13; Eutheria|Rep:
Adult male lung cDNA, RIKEN full-length enriched
library, clone:1200003H09 product:ribosomal protein S2,
full insert sequence - Mus musculus (Mouse)
Length = 235
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
MAG+ DCYTSARG T TLGNF YLTPDLW+
Sbjct: 158 MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK 199
>UniRef50_Q9BSW5 Cluster: RPS2 protein; n=26; Coelomata|Rep: RPS2
protein - Homo sapiens (Human)
Length = 97
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
MAG+ DCYTSARG T TLGNF YLTPDLW+
Sbjct: 20 MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK 61
>UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284;
Eukaryota|Rep: 40S ribosomal protein S2 - Homo sapiens
(Human)
Length = 293
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/42 (57%), Positives = 26/42 (61%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
MAG+ DCYTSARG T TLGNF YLTPDLW+
Sbjct: 216 MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK 257
>UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5;
Eukaryota|Rep: 40S ribosomal protein S2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 253
Score = 49.6 bits (113), Expect = 7e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLW 4
Q+AG++DCYT +RGST TLGNF LTP+LW
Sbjct: 188 QLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLW 229
>UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 237
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
MAG+ DCYTSAR T +LGNF YLTPDLW+
Sbjct: 160 MAGIDDCYTSARDCTASLGNFAKATFDTISKTYTYLTPDLWK 201
>UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8;
Eutheria|Rep: ribosomal protein S2 - Rattus norvegicus
Length = 233
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
M + DCYT ARG T TLGNF YLTPDLW+
Sbjct: 157 MMAIDDCYTLARGCTATLGNFAKATFDAISKIYSYLTPDLWK 198
>UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 -
Mus musculus (Mouse); n=3; Murinae|Rep: RBM27_MOUSE
Isoform 2 of Q5SFM8 - Mus musculus (Mouse) - Rattus
norvegicus
Length = 266
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
+A + DCYTSARG T TL NF YLTP+LW+
Sbjct: 197 LANIDDCYTSARGCTATLDNFDKATFNAISNTYSYLTPNLWK 238
>UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2; n=12;
Eukaryota|Rep: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2 -
Ostreococcus lucimarinus CCE9901
Length = 273
Score = 39.5 bits (88), Expect = 0.075
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLW 4
MAG+ D YT +RG T TLGN +LTPDLW
Sbjct: 206 MAGLHDVYTCSRGHTRTLGNSVKATYEALKNSYGFLTPDLW 246
>UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26;
Eukaryota|Rep: 40S ribosomal protein S2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 254
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLW 4
Q+AGV+D YT + G T TL N +LTP+LW
Sbjct: 189 QLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLW 230
>UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 213
Score = 35.1 bits (77), Expect = 1.6
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLG 70
MAG+ DCYTSARG T T G
Sbjct: 156 MAGIDDCYTSARGHTATWG 174
>UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000502977 UniRef100 entry -
Rattus norvegicus
Length = 140
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2
Query: 126 MAGVQDCYTSARGSTGTLGNF 64
MAG+ DCYTSARG T +L F
Sbjct: 52 MAGIDDCYTSARGCTASLDYF 72
>UniRef50_Q8I5K5 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 671
Score = 34.7 bits (76), Expect = 2.1
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -3
Query: 512 NHNNTLENIHLHMSKPNGIALNIKVQNIKLHSIVSERVLE*MTSCIELV-KLLSKLTVKN 336
N+N+ L NI+L S N +K +NIK + +E+ C+E + L +K T N
Sbjct: 5 NNNDHLNNIYLEFSLLNNFLKELK-ENIKKSN--NEKYTNIYDGCVEYIYSLHNKYTAWN 61
Query: 335 FCN*YKYMQTYLEHIVSEIQVSVK 264
+ N K + Y+++ V I +++K
Sbjct: 62 Y-NTEKIDEKYIDYFVQSIILNIK 84
>UniRef50_A3BJ14 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 163
Score = 33.5 bits (73), Expect = 4.9
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -2
Query: 129 QMAGVQDCYTSARGSTGTLGNF 64
+ AG++D +TS+RGST TL NF
Sbjct: 16 KFAGIEDVFTSSRGSTKTLSNF 37
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,757,080
Number of Sequences: 1657284
Number of extensions: 11983153
Number of successful extensions: 28085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 26809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28064
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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