Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0620
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    50   4e-07
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.63 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   5.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = -2

Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLW 4
           Q+AG++DCYT +RGST TLGNF              LTP+LW
Sbjct: 188 QLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLW 229


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +3

Query: 252  KHKIF-----DRYLNFTNYMFKISLHIFVLVTKILDCQFTEQFHQLY 377
            KHK F       Y++   Y F +   I + +  + +C F EQ H+LY
Sbjct: 976  KHKAFVLAVDQEYIDIVIYEFGLERRISLDLLPLSNCDFNEQKHELY 1022


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 467 VCSCVDGCFPKCCYDSVISQNYF 535
           +CS   G FP  C DS   QN+F
Sbjct: 42  ICSEKRGWFPTSCIDSSKIQNFF 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,040
Number of Sequences: 5004
Number of extensions: 55652
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)