Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0620
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0756 + 5819367-5820038,5820847-5821005                           47   1e-05
03_06_0386 + 33555682-33556344,33557138-33557299                       47   1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     33   0.16 

>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -2

Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
           Q AG++D +TS+RGST TLGNF             +LTPD WR
Sbjct: 201 QFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWR 243


>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = -2

Query: 129 QMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWR 1
           Q AG++D +TS+RGST TLGNF             +LTPD WR
Sbjct: 198 QFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWR 240


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -2

Query: 129 QMAGVQDCYTSARGSTGTLGNF 64
           + AG++D +TS+RGST TL NF
Sbjct: 86  KFAGIEDVFTSSRGSTKTLSNF 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,833,601
Number of Sequences: 37544
Number of extensions: 307618
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)